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Workflow 5: Green/Gamma Team Implementation of Modules 5-8 #37

Closed karafecho closed 5 years ago

karafecho commented 5 years ago

Overview

Module five will be executed via calls to ROBOKOP, using the same Jupyter notebook used to execute modules one through four.

Green/Gamma will explore using other Translator services to implement module five.

karafecho commented 5 years ago

Input for ROBOKOP implementation of WF5 can be found here and here.

Question template for ROBOKOP implementation of WF5:

{ "name": "Gamma wf5 template", "natural_question": "Chemical to gene to phenotype association.", "notes": "", "machine_question": { "nodes": [ { "id": "n0", "curie": "PUBCHEM:441335", "name": "Mometasone", "type": "chemical_substance" }, { "id": "n1", "type": "gene" }, { "id": "n2", "type": "biological_process_or_activity" }, { "id": "n3", "type": "phenotypic_feature" } ], "edges": [ { "id": "e0", "source_id": "n0", "target_id": "n1" }, { "id": "e1", "source_id": "n1", "target_id": "n2" }, { "id": "e2", "source_id": "n2", "target_id": "n3" } ] } }

karafecho commented 5 years ago

See Green/Gamma TranQL implementation of Workflow 5, which is related to Workflow 4, here.