ncbi-nlp NegBio issues - Githubissues

ncbi-nlp / NegBio

:newspaper: High-performance tool for negation and uncertainty detection in radiology reports

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Bump future from 0.16.0 to 0.18.3

#55 dependabot[bot] opened 1 year ago
0
Error downloading model (400 Bad Request)

#54 cjdwd opened 2 years ago
0
"pip install negbio" doesn't work

#53 abisee opened 2 years ago
3
When loading NegBioParser() the session crashes

#52 pythonista0801 opened 2 years ago
1
Bump numpy from 1.21.0 to 1.22.0

#51 dependabot[bot] opened 2 years ago
0
Bump numpy from 1.15.4 to 1.21.0

#50 dependabot[bot] closed 2 years ago
0
Bump nltk from 3.4.5 to 3.6.6

#49 dependabot[bot] closed 2 years ago
0
strange error occur, when I run python negbio/main_chexpert.py text --output=examples/test.neg.xml examples/00019248.txt examples/00000086.txt

#48 bliu62 opened 2 years ago
1
AttributeError: 'BioCAnnotation' object has no attribute 'get_total_location'

#47 newbietuan closed 3 years ago
2
Install Error

#46 binerone opened 3 years ago
2
phrases for the chexpert

#45 angy50 closed 3 years ago
1
AttributeError: Java package 'edu' is not valid

#44 MaryFllh closed 3 years ago
1
Warning in environment3.7.yml about pip-installed dependencies without pip as a dependency

#43 MaxGhenis opened 4 years ago
0
How to write patterns based on other medical data

#42 kaushikepi closed 4 years ago
6
setup.py not able to install packages from requirements.txt

#41 kaushikepi closed 4 years ago
0
Problem loading bllipparser.

#40 kaushikepi closed 4 years ago
28
TypeError: convert_trees() got an unexpected keyword argument 'add_lemmas'

#39 sush1996 closed 3 years ago
1
bump requirements

#38 alistairewj closed 5 years ago
0
Version for Portuguese-BR

#37 gazzola closed 3 years ago
1
Update README.rst

#36 yfpeng closed 5 years ago
0
MIMIC-CXR

#35 yfpeng closed 5 years ago
0
Bump nltk from 3.2.4 to 3.4.5

#34 dependabot[bot] closed 5 years ago
0
JPype1 version: 0.6.3

#33 kaushikacharya opened 5 years ago
0
A BioCAnnotation no longer has the attribute get_total_location() in the latest bioc version(1.3)

#32 aavshr closed 5 years ago
3
Removing duplicates from locs (location range of CUI annotations)

#31 kaushikacharya closed 3 years ago
2
Added option for running MetaMap with Word Sense Disambiguation option

#30 kaushikacharya closed 5 years ago
1
[Feature Request] Word Sense Disambiguation option for MetaMap

#29 kaushikacharya closed 5 years ago
1
Updated usage documentation

#28 kaushikacharya closed 5 years ago
0
jpype fails when using negbio in flask

#27 staplet3 closed 5 years ago
3
fix bugs in jpype subprogrss

#26 yfpeng closed 5 years ago
0
Detecting negation for one CUI but failing to detect negation for other CUIs

#25 kaushikacharya opened 5 years ago
2
add python 3 compatibility tools

#24 yfpeng closed 5 years ago
0
Minor fixes for parse/handling paths

#23 alistairewj opened 5 years ago
0
v0.9.4

#22 yfpeng closed 5 years ago
0
Make GitHub releases that match with PyPi

#21 alistairewj closed 5 years ago
1
Fix errors and reformat ptb2ud.py

#20 alistairewj closed 5 years ago
0
Adding Phrases for CheXpert Analysis

#19 alexrisman closed 5 years ago
1
negbio_pipeline parse fails silently

#18 vadim0x60 closed 5 years ago
4
add lemmatizer if there is no jpype

#17 yfpeng closed 5 years ago
0
convert_tree fails with subprocess backend for StanfordDependencies

#16 jirvin16 closed 5 years ago
1
Fixed bugs

#15 yfpeng closed 5 years ago
0
cumulative updates

#14 yfpeng closed 5 years ago
0
Run Stanford CoreNLP lemmatizer for jpype backend

#13 kaushikacharya closed 5 years ago
2
Adding JPype1 to the list of requirements

#12 kaushikacharya closed 5 years ago
0
Addition of Jpype1 in requirements.txt

#11 kaushikacharya closed 5 years ago
2
fix error if CUI does not exist as attribute of concept

#10 alistairewj closed 6 years ago
0
[Feature Request] Restrict/Exclude semantic types

#9 kaushikacharya closed 5 years ago
1
highlight the importance of mentioning META_MAP_HOME as absolute path

#8 yfpeng closed 6 years ago
0
Highlighting need for giving META_MAP_HOME as absolute path

#7 kaushikacharya closed 6 years ago
1
add disclaimer

#6 yfpeng closed 6 years ago
0