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ncbi-nlp / bluebert

BlueBERT, pre-trained on PubMed abstracts and clinical notes (MIMIC-III).
https://arxiv.org/abs/1906.05474
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No module named "bert" #15

Closed BharathRajaGajula closed 4 years ago

BharathRajaGajula commented 4 years ago

Hello, After running the sentence similarity command for Sentence Similarity. I've received an error saying "No module named bert". However the bert folder is at the correct place. I was unable to figure out why I am receiving error on line 23 of "run_bluebert_sts.py". I tried installing the bert using "pip install bert". It then throws an error saying that "modeling.py: No such file or directory". Then I installed the bert tensorflow version using "pip install bert-tensorflow". This clears the problem and pops a new problem like this. "tensorflow.python.framework.errors_impl.NotFoundError: /vocab.txt; No such file or directory"

Can you please update the "requirements.txt". I couldn't find the version mentioned for tensorflow, i.e; 1.12.1.

Thanks in Advance. Sorry for Inconvinience.

yfpeng commented 4 years ago

You don't need to install bert or bert-tensorflow. Instead, please add the working directory to PYTHONPATH. For example,

export PYTHONPATH=.