Open Donovan0243 opened 1 month ago
I try to print the q_prompt in console, and find the call_api function for _url_6 and url_7_ reutrn a web page as a part of prompt. Is this as expected? Or is the data returned by the NCBI interface updated?
def call_api(url): time.sleep(1) url = url.replace(' ', '+') print(url) req = urllib.request.Request(url) with urllib.request.urlopen(req) as response: call = response.read() print(call) return call
here is the console output:
https://blast.ncbi.nlm.nih.gov/blast/Blast.cgi?CMD=Put&PROGRAM=blastn&MEGABLAST=on&DATABASE=nt&FORMAT_TYPE=XML&QUERY=ATTCTGCCTTTAGTAATTTGATGACAGAGACTTCTTGGGAACCACAGCCAGGGAGCCACCCTTTACTCCACCAACAGGTGGCTTATATCCAATCTGAGAAAGAAAGAAAAAAAAAAAAGTATTTCTCT&HITLIST_SIZE=5 b'<!DOCTYPE html PUBLIC "-//W3C//DTD XHTML 1.0 Transitional//EN" "http://www.w3.org/TR/xhtml1/DTD/xhtml1-transitional.dtd">\n<html xmlns="http://www.w3.org/1999/xhtml" xml:lang="en" lang="en">\n<head>\n<meta http-equiv="Content-Type" content="text/html; charset=UTF-8" />\n<meta name="jig" content="ncbitoggler ncbiautocomplete"/>\n<meta name="ncbi_app" content="static" />\n<meta name="ncbi_pdid" content="blastformatreq" />\n<meta name="ncbi_stat" content="false" />\n<meta name="ncbi_sessionid" content="2191205F6E67D051_0000SID" />\n<meta name="ncbi_phid" content="2191205F6E67D0510000000000000001" />\n<title>NCBI Blast</title>\n<meta http-equiv="Pragma" content="no-cache">\n<link rel="stylesheet" type="text/css" href="css/uswds.min.css" media="screen" />\n<link rel="stylesheet" type="text/css" href="https://www.ncbi.nlm.nih.gov/style-guide/static/nwds/css/nwds.css"/>\n\n<link rel="stylesheet" href="css/headerNew.css?v=1"/>\n<link rel="stylesheet" href="https://use.fontawesome.com/releases/v5.5.0/css/all.css" crossorigin="anonymous"> <!-- Font Awesome icons -->\n<link rel="stylesheet" type="text/css" href="css/footerNew.css?v=1" media="screen" />\n<link rel="stylesheet" type="text/css" href="css/main.css" media="screen" />\n<link rel="stylesheet" type="text/css" href="css/common.css" media="screen" />\n<link rel="stylesheet" type="text/css" href="css/blastReq.css" media="screen" />\n<!--[if IE]>\n<link rel="stylesheet" type="text/css" href="css/blastReqIE.css" media="screen" />\n<![endif]-->\n<link rel="stylesheet" type="text/css" href="css/print.css" media="print" />\n\n\n<!--[if lte IE 6]>\n<link rel="stylesheet" type="text/css" href="css/ie6_or_less.css" />\n<![endif]-->\n<script type="text/javascript" src="/core/jig/1.15.2/js/jig.min.js "></script> \n<script type="text/javascript" src="js/utils.js"></script>\n<script type="text/javascript" src="js/blast.js"></script>\n<script type="text/javascript" src="js/format.js"></script>\n\n</head>\n\n<body id="type-a">\n\n<div id="wrap">\n\t\t<script>var useOfficialGovtHeader = true;</script>\n<section class="usa-banner">\n <div class="usa-accordion">\n <header class="usa-banner-header">\n <div class="usa-grid usa-banner-inner">\n <img src="https://www.ncbi.nlm.nih.gov/coreutils/uswds/img/favicons/favicon-57.png" alt="U.S. flag">\n <p>An official website of the United States government</p>\n <button class="usa-accordion-button usa-banner-button" aria-expanded="false" aria-controls="gov-banner-top">\n <span class="usa-banner-button-text">Here\'s how you know</span>\n </button>\n </div>\n </header>\n <div class="usa-banner-content usa-grid usa-accordion-content" id="gov-banner-top" aria-hidden="true">\n <div class="usa-banner-guidance-gov usa-width-one-half">\n <img class="usa-banner-icon usa-media_block-img" src="https://www.ncbi.nlm.nih.gov/coreutils/uswds/img/icon-dot-gov.svg" alt="Dot gov">\n <div class="usa-media_block-body">\n <p>\n <strong>The .gov means it\xe2\x80\x99s official.</strong>\n <br>\n Federal government websites often end in .gov or .mil. 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href="Blast.cgi?CMD=GetSaved" title="Saved sets of BLAST search parameters">Saved Strategies</a></li>\n <li class= "last documentation "> <a href="../doc/blast-help/" title="BLAST documentation">Help</a></li> \n </ul>\n </div>\n</nav>\n<div id="banner_ad" class="usa-alert usa-alert-info static" >\n <div class="usa-alert-body">\n <h3 class="usa-alert-heading">Important update </h3>\n <p class="usa-alert-text"> The core nucleotide database <span class="hdbld hditl">(core_nt)</span> is now the default nucleotide BLAST database. <a href="https://ncbiinsights.ncbi.nlm.nih.gov/2024/07/18/new-blast-core-nucleotide-database/">Learn more about <span class="hditl">core_nt</span>.</a></p>\n </div>\n</div>\n\n\n <div id="content-wrap">\n\n\t\t<div class="pageTitle"> \n Format Request\n <span id="frmRequestPrTr"></span> \n </div>\n\t\t\t\t<!-- Do errors this way -->\t\t\t\t\n\t\t\t\t<!--<ul class="msg"><li class=""><p></p></li></ul>-->\n\t\t\t\t<ul id="msgR" class="msg"><li class=""></li></ul>\n <div id="content">\n\t\t\t\t<form action="Blast.cgi" enctype="application/x-www-form-urlencoded" method="post" name="FormatForm" id="FormatForm">\t\t\t\t\n\n<script language="JavaScript">\n\n <!--\n\n//document.images[\'BlastHeaderGif\'].src = \'html/head_formating.gif\';\n\n// -->\n\n</script>\n\n\n\n<!--\n <p class=\'info\'>\n<strong>Job submitted.</strong>\nWe estimate that results will be ready in 16 seconds or less.\n\n</p>\n-->\n\n<div class="fbtn">\n<!--\n<a href="javascript:document.forms[0].submit();">\n<img align="middle" alt="Format button" border="0" src="FormatPage_files/format_but.gif">\n</a>\n-->\n</div>\n\n<dl class="summary query title db">\n<dd>\n</dd>\n\n<!-- <span class=" query title db">-->\n<dt class="hidden query">Query</dt><dd class="hidden query">Nucleotide Sequence</dd>\n<dt class="hidden db">Database</dt><dd class="hidden db">nt</dd>\n<dt class="hidden title">Job title</dt><dd class="hidden title">Nucleotide Sequence</dd>\n<dt class="hidden entrez">Entrez Query</dt><dd class="hidden entrez"><span class="note entrez">Note: Your search is limited to records matching this Entrez query</span></dd>\n<!-- </span> -->\n<dt><label for="rid">Request ID</label></dt><dd><input name="RID" size="50" type="text" value="ECZ8574C016" id="rid" />\n<input type="submit" value="View report" name="ViewReport" class="button" />\n<!-- <img border="0" id="viewRpButton" src="images/veiwRpButton.jpg" class="viewReport" alt="View report" mouseovImg="images/veiwRpButtonOver.jpg" mouseoutImg="images/veiwRpButton.jpg" mousedownImg="images/veiwRpButtonDown.jpg" mouseupImg="images/veiwRpButtonOver.jpg" />-->\n<input type="checkbox" name="NEWWINRES" form="FormatForm" winType="const" id="nw" class="newwin" />\n<label for="nw">Show results in a new window</label>\n</dd>\n<dt>Format<br/>\n<!--<a class=\'help\' href="#">[Help]</a></dt> -->\n\n<dd>\n<table id="filterResults" class="options blastn ">\n\n<tr class="paramSet xgl">\n<td class="hd"><label for="FORMAT_OBJECT">Show</label></td>\n<td>\n<div class="fi">\n<select id="FORMAT_OBJECT" class="reset" name="FORMAT_OBJECT" defVal="Alignment">\n<option value="Alignment" >Alignment</option>\n<option value="PSSM_Scoremat" >PssmWithParameters</option>\n<option value="Bioseq" >Bioseq</option>\n</select>\n<label for="FORMAT_TYPE">as</label>\n<select name="FORMAT_TYPE" id="FORMAT_TYPE" class="reset" defVal="HTML">\n<option value="HTML" >HTML</option>\n<option value="Text" >Plain text</option>\n<option value="ASN.1" >ASN.1</option>\n<option value="XML" selected="selected" >XML</option>\n<option value="XML2" >XML2</option>\n<option value="JSON2" >JSON2</option>\n<option value="XML2_S" >XML2_S</option>\n<option value="JSON2_S" >JSON2_S</option>\n<option value="SAM_SQ" >SAM_SQ</option>\n<option value="SAM" >SAM</option>\n</select>\n<input name="PSSM_FORMAT_TYPE" value="Text" size="3" id="pssmFormat" type="text" class="hidden dispType" />\n<input name="BIOSEQ_FORMAT_TYPE" value="ASN.1" size="3" id="bioseqFormat" type="text" class="hidden dispType" />\n<input name="PSSM_SC_FORMAT_TYPE" value="ASN.1" size="3" id="pssmScFormat" type="text" class="hidden dispType" />\n<a class="resetAll" id="resetAll" >Reset form to defaults</a>\n<a class="helplink ui-ncbitoggler" data-jig="ncbitoggler" title="Alignments object formatting help" id="formatHelp" href="#"><i class="fas fa-question-circle"></i><span class="usa-sr-only">Help</span></a>\n<div class="ui-helper-reset" aria-live="assertive" >\n<p class="helpbox ui-ncbitoggler-slave" id="hlp1">\nThese options control formatting of alignments in results pages. The\ndefault is HTML, but other formats (including plain text) are available.\nPSSM and PssmWithParameters are representations of Position Specific Scoring Matrices and are only available for PSI-BLAST. \nThe Advanced view option allows the database descriptions to be sorted by various indices in a table.\n</p>\n</div><!-- ARIA -->\n</div>\n</td>\n</tr>\n\n<tr class="odd paramSet">\n<td class="hd"><label for="ALIGNMENT_VIEW">Alignment View</label></td>\n<td>\n<div class="fi">\n<select name="ALIGNMENT_VIEW" id="ALIGNMENT_VIEW" defVal="Pairwise" class="reset">\n<option value="Pairwise" >Pairwise</option>\n<option value="PairwiseWithIdentities" >Pairwise with dots for identities</option>\n<option value="QueryAnchored" >Query-anchored with dots for identities</option>\n<option value="QueryAnchoredNoIdentities" >Query-anchored with letters for identities</option>\n<option value="FlatQueryAnchored" >Flat query-anchored with dots for identities</option>\n<option value="FlatQueryAnchoredNoIdentities" >Flat query-anchored with letters for identities</option>\n<option value="Tabular" >Hit Table</option>\n</select>\n\n<a class="helplink ui-ncbitoggler" data-jig="ncbitoggler" title="Alignments view options help" id="alnViewHelp" href="#"><i class="fas fa-question-circle"></i><span class="usa-sr-only">Help</span></a>\n<div class="ui-helper-reset" aria-live="assertive" >\n<p class="helpbox ui-ncbitoggler-slave" id="hlp2">\nChoose how to view alignments.\nThe default "pairwise" view shows how each subject sequence aligns\nindividually to the query sequence. The "query-anchored" view shows how\nall subject sequences align to the query sequence. For each view type,\nyou can choose to show "identities" (matching residues) as letters or\ndots.\n<a href="https://blast.ncbi.nlm.nih.gov/doc/blast-topics/resultformatoptions.html#alignment-view" target="helpWin" title="Additional alignments view options help">more...</a>\n</p>\n</div><!-- ARIA -->\n</div>\n</td>\n</tr>\n\n<tr class="paramSet">\n<td class="hd"><label>Display</label></td>\n<td class="cb">\n<div class="fi">\n<input name="SHOW_OVERVIEW" id="SHOW_OVERVIEW" type="checkbox" class="cb reset" defVal="checked" checked="checked" />\n<label class="rb" for="SHOW_OVERVIEW">Graphical Overview</label>\n\n<span id="shl" >\n<input name="SHOW_LINKOUT" id="SHOW_LINKOUT" type="checkbox" class="cb reset" defVal="checked" checked="checked" />\n<label class="rb" for="SHOW_LINKOUT">Linkout</label>\n</span>\n<span id="gts" >\n<input name="GET_SEQUENCE" id="GET_SEQUENCE" type="checkbox" class="cb reset" defVal="checked" checked="checked" />\n<label class="rb" for="GET_SEQUENCE">Sequence Retrieval</label>\n</span>\n\n<input name="NCBI_GI" id="NCBI_GI" type="checkbox" class="cb reset " defVal="unchecked" />\n<label class="rb " for="NCBI_GI">NCBI-gi</label>\n<span id="scf" >\n<input name="SHOW_CDS_FEATURE" id="SHOW_CDS_FEATURE" type="checkbox" class="cb reset blastn" defVal="unchecked" />\n<label for="SHOW_CDS_FEATURE" class="blastn">CDS feature</label>\n</span>\n<a class="helplink ui-ncbitoggler" data-jig="ncbitoggler" title="Alignments display options help" id="displayHelp" href="#"><i class="fas fa-question-circle"></i><span class="usa-sr-only">Help</span></a>\n<div class="ui-helper-reset" aria-live="assertive" >\n<ul class="helpbox ui-ncbitoggler-slave" id="hlp3">\n<li>Graphical Overview: Graphical Overview: Show graph of similar sequence regions aligned to query.\n<a href="https://blast.ncbi.nlm.nih.gov/doc/blast-topics/resultformatoptions.html#graphical-overview" target="helpWin" title="Graphical Overview help">more...</a>\n</li>\n<li>NCBI-gi: Show NCBI gi identifiers.\n</li>\n<li>CDS feature: Show annotated coding region and translation.\n<a href="https://blast.ncbi.nlm.nih.gov/doc/blast-topics/resultformatoptions.html#cds-feature" title="CDS feature help" target="helpWin" >more...</a>\n</li></ul>\n</div><!-- ARIA -->\n</div>\n</td>\n</tr>\n\n\n<tr class="paramSet odd xgl">\n<td class="hd"><label>Masking</label></td>\n<td>\n<div class="fi">\n<label for="MASK_CHAR"> Character: </label>\n<select name="MASK_CHAR" id="MASK_CHAR" class="reset" defVal="2">\n<option value="0" >X for protein, n for nucleotide</option>\n<option value="2" selected="selected" >Lower Case</option>\n</select>\n<label for="MASK_COLOR"> Color:</label>\n<select name="MASK_COLOR" id="MASK_COLOR" class="reset" defVal="1">\n<option value="0" >Black\n</option>\n\n<option value="1" selected="selected" >Grey\n</option>\n\n<option value="2" >Red\n</option>\n\n</select>\n<a class="helplink ui-ncbitoggler" data-jig="ncbitoggler" title="Alignments masking help" id="maskingHelp" href="#"><i class="fas fa-question-circle"></i><span class="usa-sr-only">Help</span></a>\n<div class="ui-helper-reset" aria-live="assertive" >\n<ul class="helpbox ui-ncbitoggler-slave" id="hlp4">\n<li>Masking Character: Display masked (filtered) sequence regions as lower-case or as specific letters (N for nucleotide, P for protein).\n</li>\n<li>Masking Color: Display masked sequence regions in the given color.</li>\n</ul>\n</div><!-- ARIA -->\n</div>\n</td>\n</tr>\n\n\n<tr id="lr" class="paramSet xgl">\n<td class="hd"><label>Limit results</label></td>\n<td>\n<div class="fi">\n<label for="FRM_DESCRIPTIONS">Descriptions:</label>\n<select name="DESCRIPTIONS" id="FRM_DESCRIPTIONS" class="reset" defVal="100">\n<option value="0" >0</option>\n<option value="10" >10</option>\n<option value="50" >50</option>\n<option value="100" selected="selected" >100</option>\n<option value="250" >250</option>\n<option value="500" >500</option>\n<option value="1000" >1000</option>\n<option value="5000" >5000</option>\n<option value="10000" >10000</option>\n<option value="20000" >20000</option>\n</select>\n\n<label for="FRM_NUM_OVERVIEW">Graphical overview:</label>\n<select name="NUM_OVERVIEW" id="FRM_NUM_OVERVIEW" class="reset" defVal="100">\n<option value="0" >0</option>\n<option value="10" >10</option>\n<option value="50" >50</option>\n<option value="100" selected="selected" >100</option>\n<option value="250" >250</option>\n<option value="500" >500</option>\n<option value="1000" >1000</option>\n</select>\n<span id="frmAln">\n<label for="FRM_ALIGNMENTS">Alignments:</label>\n<select name="ALIGNMENTS" id="FRM_ALIGNMENTS" class="reset" defVal="100">\n<option value="0" >0</option>\n<option value="10" >10</option>\n<option value="50" >50</option>\n<option value="100" selected="selected" >100</option>\n<option value="250" >250</option>\n<option value="500" >500</option>\n<option value="1000" >1000</option>\n<option value="5000" >5000</option>\n<option value="10000" >10000</option>\n<option value="20000" >20000</option>\n</select>\n</span>\n<label for="FRM_LINE_LENGTH">Line length:</label>\n<select name="LINE_LENGTH" id="FRM_LINE_LENGTH" class="reset" defVal="60">\n<option value="60" >60</option>\n<option value="90" >90</option>\n<option value="120" >120</option>\n<option value="150" >150</option>\n</select>\n<a class="helplink ui-ncbitoggler" data-jig="ncbitoggler" title="Limit number of descriptions/alignments help" id="numHelp" href="#"><i class="fas fa-question-circle"></i><span class="usa-sr-only">Help</span></a>\n<div class="ui-helper-reset" aria-live="assertive" >\n<ul class="helpbox ui-ncbitoggler-slave" id="hlp5">\n<li>Descriptions: Show short descriptions for up to the given number of sequences.</li> \n<li>Alignments: Show alignments for up to the given number of sequences, in order of statistical significance.</li>\n<li>Line lenghth: Number of letters to show on one line in an alignment.</li>\n</ul>\n</div><!-- ARIA -->\n</div>\n</td>\n</tr>\n\n<tr class="paramSet odd xgl ">\n<td class="hd"></td>\n<td>\n<div class="">\n<label for="qorganism">Organism</label>\n<span class="instr">Type common name, binomial, taxid, or group name. Only 20 top taxa will be shown.</span><br/>\n<input name="FORMAT_ORGANISM" size="55" type="text" id="qorganism" value="" data-jigconfig="dictionary:\'blast_nt_nucl_sg\',isCrossDomain:false" autocomplete="off" data-jig="ncbiautocomplete" class="reset">\n<input type="hidden" value = "1" name="FORMAT_NUM_ORG" id="numOrg" />\n<input type="checkbox" name="FORMAT_ORG_EXCLUDE" class="oExclR cb" id="orgExcl"/> \n<label for="orgExcl" class="right">exclude</label>\n<a href="#" title="Add organism" class="addOrg" id="addOrg"><img border="0" src="css/images/addOrg.jpg" id="addOrgIm" alt="Add organism" mouseovImg="css/images/addOrgOver.jpg" mouseoutImg="css/images/addOrg.jpg" mousedownImg="css/images/addOrgDown.jpg" mouseupImg="css/images/addOrgOver.jpg" /></a>\n<div id="orgs">\n\n</div>\n<div class="fi">\n<a class="helplink ui-ncbitoggler" data-jig="ncbitoggler" title="Limit results by organism help" id="organismHelp" href="#"><i class="fas fa-question-circle"></i><span class="usa-sr-only">Help</span></a>\n<div class="ui-helper-reset" aria-live="assertive" >\n<p class="helpbox ui-ncbitoggler-slave" id="hlp6">\nShow only sequences from the given organism.\n</p>\n</div><!-- ARIA -->\n</div>\n</div>\n</td>\n</tr>\n\n<tr class="paramSet xgl ">\n<td class="hd"></td>\n<td>\n<div class="fi">\n<label for="FORMAT_EQ_TEXT">Entrez query:</label>\n<input name="FORMAT_EQ_TEXT" id="FORMAT_EQ_TEXT" size="60" type="text" value="" class="reset" />\n<a class="helplink ui-ncbitoggler" data-jig="ncbitoggler" title="Limit results by Entrez query help" id="entrezHelp" href="#"><i class="fas fa-question-circle"></i><span class="usa-sr-only">Help</span></a>\n<div class="ui-helper-reset" aria-live="assertive" >\n<p class="helpbox ui-ncbitoggler-slave" id="hlp7">\nShow only those sequences that match the given Entrez query.\n<a href="https://blast.ncbi.nlm.nih.gov/doc/blast-topics/resultformatoptions.html#limit-results-by-entrez-query" target="helpWin" title="Additional limit results by Entrez query help" target="helpWin">more...</a>\n</p>\n</div><!-- ARIA -->\n</div>\n</td>\n</tr>\n\n \n<tr class="paramSet odd xgl">\n<td class="hd"></td>\n<td>\n<div class="fi">\n<label for="EXPECT_LOW">Expect Min:</label> <input name="EXPECT_LOW" id="EXPECT_LOW" size="10" type="text" value="" class="reset"/>\n<label for="EXPECT_HIGH">Expect Max:</label> <input name="EXPECT_HIGH" id="EXPECT_HIGH" size="10" type="text" value="" class="reset" />\n<a class="helplink ui-ncbitoggler" data-jig="ncbitoggler" title="Limit results by expect value range help" id="expectHelp" href="#"><i class="fas fa-question-circle"></i><span class="usa-sr-only">Help</span></a>\n<div class="ui-helper-reset" aria-live="assertive" >\n<p class="helpbox ui-ncbitoggler-slave" id="hlp8">\nShow only sequences with expect values in the given range.\n<a href="https://blast.ncbi.nlm.nih.gov/doc/blast-topics/resultformatoptions.html#expect-value-range" target="helpWin" title="Additional limit results by expect value range help">more...</a>\n</p>\n</div><!-- ARIA -->\n</div>\n</td>\n</tr>\n<tr class="paramSet xgl">\n<td class="hd"></td>\n<td>\n <div class="fi">\n<label for="PERC_IDENT_LOW">Percent Identity Min:</label> <input name="PERC_IDENT_LOW" id="PERC_IDENT_LOW" size="10" type="text" value="" class="reset"/>\n<label for="PERC_IDENT_HIGH">Percent Identity Max:</label> <input name="PERC_IDENT_HIGH" id="PERC_IDENT_HIGH" size="10" type="text" value="" class="reset" />\n<a class="helplink ui-ncbitoggler" data-jig="ncbitoggler" title="Limit results by percent identity range help" id="percIdentHelp" href="#"><i class="fas fa-question-circle"></i><span class="usa-sr-only">Help</span></a>\n<div class="ui-helper-reset" aria-live="assertive" >\n<p class="helpbox ui-ncbitoggler-slave" id="hlp10">\n Show only sequences with percent identity values in the given range. \n</p>\n</div><!-- ARIA -->\n</div>\n</td>\n</tr> \n<tr class="psiBlast odd paramSet xgl ">\n<td class="hd"><label>Format for</label></td>\n<td>\n<div class="fi">\n<input name="RUN_PSIBLAST_FORM" id="RUN_PSIBLAST" type="checkbox" class="cb psiBlast hidden" />\n<label for="I_THRESH">PSI-BLAST with inclusion threshold:</label>\n<input name="I_THRESH" id="I_THRESH" size="10" type="text" value="" defVal="0.005" />\n<a class="helplink ui-ncbitoggler" data-jig="ncbitoggler" title="PSI BLAST formatting help" id="psiHelp" href="#"><i class="fas fa-question-circle"></i><span class="usa-sr-only">Help</span></a>\n<div class="ui-helper-reset" aria-live="assertive" >\n<ul class="helpbox ui-ncbitoggler-slave" id="hlp9">\n<li>Format for PSI-BLAST: The Position-Specific Iterated BLAST (PSI-BLAST) program performs iterative searches with a protein query, \nin which sequences found in one round of search are used to build a custom score model for the next round.\n<a href="https://blast.ncbi.nlm.nih.gov/doc/blast-topics/resultformatoptions.html#format-for-psi-blast" target="helpWin" title="Additional PSI BLAST formatting help">more...</a>\n</li> \n<li>Inclusion Threshold: This sets the statistical significance threshold for including a sequence in the model used \nby PSI-BLAST to create the PSSM on the next iteration.</li> \n</ul>\n</div><!-- ARIA -->\n</div>\n</td>\n</tr>\n</table>\n</dd>\n</dl>\n\n<input name="RID" value="ECZ8574C016" type="hidden" />\n<input name="CDD_RID" value="" type="hidden" />\n<input name="CDD_SEARCH_STATE" type="hidden" value="" />\n\n<input name="STEP_NUMBER" value="" id="stepNumber" type="hidden" />\n<input name="CMD" value="Get" type="hidden" />\n<input name="FORMAT_EQ_OP" value="AND" type="hidden" />\n<input name="RESULTS_PAGE_TARGET" type="hidden" id="resPageTarget" value="Blast_Results_for_1953017986" />\n<input name="QUERY_INFO" type="hidden" value="Nucleotide Sequence" /> \t\t\n<input name="ENTREZ_QUERY" type="hidden" value="" />\n<input name="QUERY_INDEX" type="hidden" value="0"/>\n<input name="NUM_QUERIES" type="hidden" value="1"/>\n<input name="CONFIG_DESCR" type="hidden" value="ClustMemNbr,ClustComn,Ds,Sc,Ms,Ts,Cov,Eval,Idnt,AccLen,Acc" />\n\n\n\n\n<!-- Those params are set in the template (blastn.dat, blastp.dat etc. -->\n<input name="BLAST_PROGRAMS" type="hidden" value="blastn"/>\n<input name="PAGE" type="hidden" value="Nucleotides"/>\n<input name="PROGRAM" type="hidden" value="blastn"/>\n<input name="MEGABLAST" type="hidden" value="" />\n<input name="RUN_PSIBLAST" type="hidden" value="" />\n<input name="BLAST_SPEC" id="blastSpec" type="hidden" value=""/>\n\n\n<input name="QUERY" type="hidden" value=""/>\n<input name="JOB_TITLE" type="hidden" value="Nucleotide Sequence"/>\n<input name="QUERY_TO" type="hidden" value=""/>\n<input name="QUERY_FROM" type="hidden" value=""/>\n<input name="SUBJECTS_FROM" type="hidden" value=""/>\n<input name="SUBJECTS_TO" type="hidden" value=""/>\n<input name="EQ_TEXT" type="hidden" value=""/>\n<input name="ORGN" type="hidden" value=""/>\n<input name="EQ_MENU" type="hidden" value=""/>\n<input name="ORG_EXCLUDE" type="hidden" value=""/>\n<input name="PHI_PATTERN" type="hidden" value=""/>\n<input name="EXPECT" type="hidden" value=""/>\t\t\t\t\t\t\t\t\t\n<input name="DATABASE" type="hidden" value="nt"/>\n<input name="DB_GROUP" type="hidden" value=""/>\n<input name="SUBGROUP_NAME" type="hidden" value=""/>\n\n<input name="GENETIC_CODE" type="hidden" value=""/>\n<input name="WORD_SIZE" type="hidden" value=""/>\n<input name="MATCH_SCORES" type="hidden" value=""/>\t\t\t\n<input name="MATRIX_NAME" type="hidden" value=""/>\t\t\t\t\n<input name="GAPCOSTS" type="hidden" value=""/>\n<input name="MAX_NUM_SEQ" id="maxNumSeq" type="hidden" value=""/>\t\t\t\t\t\n<input name="COMPOSITION_BASED_STATISTICS" type="hidden" value=""/>\t\t\t\n<input name="NEWWIN" type="hidden" value=""/>\n<input name="SHORT_QUERY_ADJUST" type="hidden" value=""/>\n<input name="FILTER" type="hidden" value=""/>\n<input name="REPEATS" type="hidden" value=""/>\n<input name="ID_FOR_PSSM" type="hidden" value=""/>\n<input name="EXCLUDE_MODELS" type="hidden" value=""/>\n<input name="EXCLUDE_SEQ_UNCULT" type="hidden" value=""/>\n<input name="WP_PROTEINS" type="hidden" value=""/>\n<input name="SEQ_FROM_TYPE" type="hidden" value=""/>\n<input name="ENTREZ_QUERY" type="hidden" value=""/>\n<input name="ENTREZ_QUERY_PRESET" type="hidden" value=""/>\n<input name="ENTREZ_QUERY_PRESET_EXCL" type="hidden" value=""/>\n<input name="NUM_ORG" type="hidden" value = "1" />\n\n<!-- PSSM -->\n<input name="LCASE_MASK" type="hidden" value=""/>\n<input name="TEMPLATE_TYPE" type="hidden" value=""/>\n<input name="TEMPLATE_LENGTH" type="hidden" value=""/>\n<input name="I_THRESH" type="hidden" value=""/>\n<input name="PSI_PSEUDOCOUNT" type="hidden" value=""/>\n<input name="DI_THRESH" type="hidden" id="diThresh" value=""/>\n<input name="HSP_RANGE_MAX" type="hidden" value=""/>\n\n\n\n<input name="ADJUSTED_FOR_SHORT_QUERY" type="hidden" value=""/>\n<input name="MIXED_QUERIES" type="hidden" value=""/>\n<input name="MIXED_DATABASE" 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And I find that running it once time, would cost a lot of token, maybe the prompt shown above is one of the reason?
I try to print the q_prompt in console, and find the call_api function for _url_6 and url_7_ reutrn a web page as a part of prompt. Is this as expected? Or is the data returned by the NCBI interface updated?
here is the console output:
And I find that running it once time, would cost a lot of token, maybe the prompt shown above is one of the reason?