ncbi / SKESA

SKESA assembler
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The description of the contigs file header format broken in README #44

Open samuell opened 1 week ago

samuell commented 1 week ago

The description of the output format of the headers in the contig output fasta file is intelligible:

See screenshot:

image

... and quote:

The definition line for contig has format Contig__ where is consecutive integers starting from one for numbering the contigs and is the average count of k-mers in the contig using minimal k-mer length used in the assembly.

There are multiple things missing here.

souvorov commented 1 week ago

Thanks!

samuell commented 1 week ago

No prob, thank you for a fantastic tool!