Release 3.11.8 - Githubissues

ncbi / amr

AMRFinderPlus - Identify AMR genes and point mutations, and virulence and stress resistance genes in assembled bacterial nucleotide and protein sequence.

https://www.ncbi.nlm.nih.gov/pathogens/antimicrobial-resistance/AMRFinder/

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Release 3.11.8 #116

Closed evolarjun closed 1 year ago

evolarjun commented 1 year ago

pull request for release 3.11.8.

Performance improvements by optimizing blast parameters
- Faster 70% single-threaded on nucleotide-only run
- Faster by 64% on single-threaded protein-only run
- Faster by 58% on single-threaded combined run
Fixed handling for FASTA identifiers with leading underscore "_" (https://github.com/ncbi/amr/issues/115)
Improved handling of special characters in GFF files
Added --annotation_format standard