workflows/RSeQC/rseqc-bam-qc-SE.cwl: reference to non-existent step inputs

ncbi / cwl-ngs-workflows-cbb

A set of CWL tools and workflows used by NCBI Computational Biology Branch for NGS data analysis

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workflows/RSeQC/rseqc-bam-qc-SE.cwl: reference to non-existent step inputs #30

Closed ghost closed 4 years ago

ghost commented 4 years ago

The tool tools/basic/gzip.cwl does not have inputs c and outFileName, however, steps in workflows/RSeQC/rseqc-bam-qc-SE.cwl refer to them as do steps in workflows/File-formats/create-tagAlign.cwl, workflows/ChIP-Seq/gem.cwl and workflows/ChIP-Seq/peak-calling-MACS2.cwl

Thanks!

r78v10a07 commented 4 years ago

Hi, Thank you so much for reporting this. I've fixed the problems. See commit