MIXS IDs on NCBI datasets

ncbi / datasets

NCBI Datasets is a new resource that lets you easily gather data from across NCBI databases.

https://www.ncbi.nlm.nih.gov/datasets

Other

334 stars 39 forks source link

MIXS IDs on NCBI datasets #46

Closed maxmaronna closed 3 years ago

maxmaronna commented 3 years ago

Hello, I am interested in mapping MIXS IDs on NCBI datasets and to create a "NCBI subway visualization map". I did not find an unique sheet with all MIXS IDs in just one single tab (version 5), so I created one online: https://docs.google.com/spreadsheets/d/1O8UZ5Myqylpdpk94G_zo2r0LN1hwWvOzRQ0SHDDsQEM/edit?usp=sharing Now, I did not find a proper sheet to map MIXS IDS on all NCBI metadata. Do you know if there is anything like this on any website (even outside the NCBI website)? Thanks in advance, maxmaronna.

BradHolmes commented 3 years ago

Hi,

I'm afraid there is nothing like this that we are aware of. Sorry.

Brad

maxmaronna commented 3 years ago

Hello Brad,

Thanks for your answer. Do you have a sheet to share, with all possible metadata, considering NCBI Datasets-section Genomes: Genome, Bioproject, Assembly, Biosample, Nucleotide, SRA, Biocollection, Taxonomy?

Thanks in advance, max

ericcox1 commented 3 years ago

Hi Max,

I think the best thing we can offer at this time would be the genome assembly and genome sequence report schemas, which describe the metadata available for the NCBI Datasets Genome Data Package.

Genome assembly report schema Genome sequence report schema

Best, Eric

maxmaronna commented 3 years ago

Hi Eric, I am sorry for this late reply. Thanks a lot for the links. If NCBI is considering to work to align&map metadata definitions to MIxS_Darwin Core, I would like to help.

Best max