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ncbi / egapx

Eukaryotic Genome Annotation Pipeline-External caller scripts and documentation
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Error using input_D_farinae_small_rnaseq.yaml (v0.2-alpha) #25

Closed richard-burhans closed 2 months ago

richard-burhans commented 2 months ago

Running python3 ui/egapx.py ./examples/input_D_farinae_small_rnaseq.yaml -e docker -o example_out gives me the following result:

!!WARNING!!
This is an alpha release with limited features and organism scope to collect initial feedback on execution. Outputs are not yet complete and not intended for production use.

ERROR: Missing parameter: 'taxid'
etvedte commented 2 months ago

Hello,

This is an outdated yaml file. taxid: is a required parameter: https://github.com/ncbi/egapx?tab=readme-ov-file#input-data-format

You should test with ./examples/input_D_farinae_small.yaml https://github.com/ncbi/egapx?tab=readme-ov-file#input-example

Eric