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ncbi / egapx

Eukaryotic Genome Annotation Pipeline-External caller scripts and documentation
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Question: partial annotation #27

Closed Artifice120 closed 3 months ago

Artifice120 commented 3 months ago

Afternoon,

I previously used your program to annotate an foxglove aphid. The gene predictions seem fine except that the mitochondria genes seemed to have been removed, since they were present in the original assembly and not in the annotations.

Since I know which contig contains the mitochondria genome, can I have e-gapx just annotate the one 'skipped' contig ?

pstrope commented 3 months ago

We do not currently annotate organelles.

Artifice120 commented 3 months ago

Thanks,

Good to know.

Its small enough to just blast and annotate manually.

Works great on the main foxglove aphid genome.

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