multireader: command not found

[fishman311]

Hi developers,

When I test example, my bash:

pythion ../ui/egapx.py input_D_farinae_small.yaml -e singularity -w dfs_work -o dfs_out -lc ../local_cache

The error is ： ERROR ~ Error executing process > 'egapx:setup_proteins:convert_proteins'

Caused by: Process egapx:setup_proteins:convert_proteins terminated with an error exit status (127)

Command executed:

mkdir -p asn mkdir -p fasta if [[ true == true ]]; then zcat src/6954.faa.gz | sed 's/>([^ |]+)( .)\?$/>lcl|\1\2/' > fasta/6954.faa else sed 's/>([^ |]+)( .)\?$/>lcl|\1\2/' src/6954.faa.gz > fasta/6954.faa fi multireader -flags ParseRawID -out-format asn_text -input fasta/6954.faa -output asn/6954.asn multireader -flags ParseRawID -out-format asn_binary -input fasta/6954.faa -output asn/6954.asnb

Command exit status: 127

Command output: (empty)

Command error: .command.sh: line 9: multireader: command not found

Work dir: /mnt/lfj/soft/egapx/test/dfs_work/75/9a8ad541a81803c75b1b85fe0d3ed3

Tip: you can try to figure out what's wrong by changing to the process work dir and showing the script file named .command.sh

-- Check 'dfs_out/nextflow.log' file for details

Could you help me solve this problem?

[pstrope]

Are you using a previous version of the pipeline or singularity container? We've seen something like this in a previous version. Please remove the image completely, and then update the code and re-run.