pstrope
commented
2 days ago Can you please try to re-download the files for local_cache, and then check how many files got downloaded?
python3 ui/egapx.py -dl -lc ../local_cache
and then
find ../local_cache -type f| wc -l
Hi developers,
It's my test run: python3 ui/egapx.py input_D_farinae_small.yaml -e singularity -w dfs_work -o dfs_out -lc local_cache -c ./egapx_config
ERROR ~ Error executing process > 'egapx:gnomon_plane:gnomon_training_iterations:gnomon_training_iteration:gnomon_training:run_gn
Caused by: Process egapx:gnomon_plane:gnomon_training_iterations:gnomon_training_iteration:gnomon_training:run_gnomon_training terminate
Command executed:
mkdir -p output lds2_indexer -source indexed -db ./indexed_lds gnomon_training -b -asn -maxintron 100000 -nogenbank -lds2 ./indexed_lds -input gnomon_wnode.out -out output/hmm_params.asn
Command exit status: 1
Command output: Models for training 0
Command error: added loader: LDS2: indexed_lds (10) Models for training 0 Not enough data for traiing 0
Work dir: /public1/home/ligch/software/egapx/dfs_work/22/cfadd2b7a56aba4c19a8b6bb0dae9f
It's the failed dir: dfs_work.tar.gz
gnomon_wnode.out: https://drive.google.com/file/d/1z9l6hfXAuvzUI_vgaZwoi9XGmxsRDIYL/view?usp=drive_link
Thank you for your help!
Guo-Cheng