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ncbi / fcs-gx

Foreign Contamination Screening - GX source code
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There was a problem installing the software. #7

Open jwli-code opened 2 months ago

jwli-code commented 2 months ago

After running "git clone," there is no "build" folder.

fatal: Not a git repository (or any parent up to mount point /public)
Stopping at filesystem boundary (GIT_DISCOVERY_ACROSS_FILESYSTEM not set).
cmake -B build -DCMAKE_BUILD_TYPE=RELEASE
CMake Error: The source directory "/../fcs-gx-0.5.0/build" does not exist.
Specify --help for usage, or press the help button on the CMake GUI.
make: *** [Makefile:7: build/Makefile] Error 1
etvedte commented 2 months ago

Hello,

A few questions:

Do you need to run FCS-GX outside a Docker/Singularity container? We recommend following the quickstart using containers if that's an option.

What git command are you running that produces the message below: fatal: Not a git repository (or any parent up to mount point /public)

What is the set of commands including git clone and after that produced this message? You need to run git clone, then cd into the repo root, then run make which generates the build folder.