ncbi / fcs

Foreign Contamination Screening caller scripts and documentation
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[BUG]: run_fcsgx.py fails if out dir is not present #33

Closed ptrebert closed 1 year ago

ptrebert commented 1 year ago

Describe the bug run_fcsgx.py fails if the output directory is not present.

To Reproduce Start the tool w/o creating the directory first.

Software versions (please complete the following information): See #31

Log Files not needed

Additional context This might arguably be more of a feature request, and I have seen that your tutorial is complete in that regard

6. Create a directory to store the output of the program:

So here is just my view:

Best, Peter

pstrope commented 1 year ago

In the new version that we are going to release soon, the output dir will be created if not already present. Re-running the program will start the screening process from the beginning. The files will be re-written.

Thank you so much for your comments and suggestions!