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Foreign Contamination Screening caller scripts and documentation
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[BUG]: /bin/sh does not exist in container #90

Open fgvieira opened 2 days ago

fgvieira commented 2 days ago

Describe the bug A clear and concise description of what the bug is.

when running:

singularity shell fcs-adaptor.sif

gives the error:

ERROR:   /bin/sh does not exist in container
pstrope commented 2 days ago

I just checked:

singularity shell fcs-adaptor.sif
Singularity>

Please remove your previous sif and get a fresh one. curl https://ftp.ncbi.nlm.nih.gov/genomes/TOOLS/FCS/releases/latest/fcs-adaptor.sif -Lo fcs-adaptor.sif

fgvieira commented 2 days ago

@pstrope thanks for the quick reply. it seems the image on NCBI server works, but not the docker image:

singularity shell docker://ncbi/fcs-adaptor:0.5.4