search

ncbi / icn3d

web-based protein structure viewer and analysis tool interactively or in batch mode
https://www.ncbi.nlm.nih.gov/Structure/icn3d
Other
154 stars 42 forks source link

Can the atom element labels be the same size? See the image #61

Closed digitalbio closed 3 years ago

digitalbio commented 3 years ago

I used Label > per Atom Element - this is great except the label for the Iron is much bigger than everything else. Can these be the same size?

Screen Shot 2021-11-06 at 5 48 08 PM
jiywang3 commented 3 years ago

This was fixed. Thanks for your report.

digitalbio commented 3 years ago

This one is not fixed yet.

Here's the information from the command window.

clear all pickatom 3957(chain: 2DN2_D, residue: HIS, number: 92, atom: CE1) pickatom 4525(chain: 2DN2_HEM4, residue: HEM, number: 1003, atom: CGA) style proteins ball and stick style chemicals ball and stick add element labels

And here's what I did.

  1. Opened 2DN2
  2. I selected the histidine that's bound to the heme group.
  3. I selected the heme group.
  4. Style menu and chose Proteins > Ball and Stick.
  5. Style menu and chose Chemicals > Ball and Stick.
  6. Analysis > Label > per Atom element

I still get a large label on the iron (Fe) and I'm unable to make the label on the iron the same size as the other labels.

Screen Shot 2021-11-08 at 12 30 31 PM
jiywang3 commented 3 years ago

Could you refresh your browser and try it again? Or open a different browser such as chrome or firefox? I guess your browser was cached. You should see the iCn3D version 3.4.9 when you click the "Help" menu.

digitalbio commented 3 years ago

That worked. It's working perfectly now. Thanks.