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ncbi / icn3d

web-based protein structure viewer and analysis tool interactively or in batch mode
https://www.ncbi.nlm.nih.gov/Structure/icn3d
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The amino acid names in on the X axis of the 2D interaction map are too difficult to read #69

Closed digitalbio closed 2 years ago

digitalbio commented 2 years ago

Web browser - Firefox. [*I have to use Firefox because many features don't work in Safari or Chrome.]

  1. Loaded 7BZ5.
  2. Opened Select > by Distance, chose chains H & L.
  3. Named selection "epitope"
  4. Opened Analysis > Interactions
  5. Deselected Halogen bonds, pi cation, and contacts/interactions
  6. Selected epitope and H and L chains for first and second sets.
  7. Clicked 2D Interaction map.

Result - the map is nice but I can't read the information on the X axis. The text needs to be spaced differently.

Attempted work arounds:

  1. I tried changing the scale but this didn't change the text spacing.
  2. I tried downloading the PNG file but it didn't contain an image. I uploaded the file below.
Screen Shot 2021-11-24 at 6 33 56 AM

7BZ5_scatterplot

jiywang3 commented 2 years ago

Are you working in Mac? The font seemed OK to me both in Mac and PC. Maybe your screen resolution is low?

What's the problem in Safari and Chrome? I typically work in Chrome.

jiywang3 commented 2 years ago

OK. I reproduced the same problem in Mac Firefox. I will modify it.

jiywang3 commented 2 years ago

The bug was fixed. You need to clear cache and try it again.

digitalbio commented 2 years ago

Thank you! It looks very nice!