configure script needs to be run in subdirectories

ncbi / ngs

NGS Language Bindings

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configure script needs to be run in subdirectories #13

Closed seandavi closed 7 years ago

seandavi commented 8 years ago

When using the top-level ./configure script, it appears that at least some of the subdirectory configure scripts are not being run. So, I have to do:

./configure
make -C ngs-sdk
make -C ngs-sdk install
make -C ngs-java
make -C ngs-java install
cd ngs-bam
./configure
cd ..
make -C ngs-bam
make -C ngs-bam install

Is this expected with a fresh git checkout from today?

klymenko commented 7 years ago

configure is executed in subdirectories

seandavi commented 7 years ago

Still missed one, I think. After I have run ./configure in a top-level directory, I still see the following, but only for ngs-bam.

make -C ngs-bam/
*** File 'Makefile.config.mac.x86_64' is missing. Please run ./configure
make: *** [Makefile.config.mac.x86_64] Error 1

klymenko commented 7 years ago

ngs-bam is intentionally excluded. In fact, it is a separate package. It requires ncbi-vdb.

To build it, you need:

configure and make ngs/ngs-sdk
configure and make ncbi-vdb Just now you can configure and make ngs/ngs-bam.

seandavi commented 7 years ago

Thanks, @klymenko. It is probably somewhere, but I did not see that documented in the building from source page here:

https://github.com/ncbi/ngs/wiki/Building-and-Installing-from-Source

No problem, but it did lead to my confusion.

kwrodarmer commented 7 years ago

We'll update documentation if it's not clear. Thanks, @seandavi !