search

ncbi / pgap

NCBI Prokaryotic Genome Annotation Pipeline
Other
310 stars 90 forks source link

Question #146

Closed anilchauhanhp9 closed 3 years ago

anilchauhanhp9 commented 3 years ago

Hi, I annotated a whole genome using PGAP standalone package I want to know that can i submit the processed data, i.e. results of standalone PGAP annotation in the NCBI also the number of pseudogenes in the annotations are 7%, is the data good enough for submission...?

thibaudnis commented 3 years ago

Hello! Please make sure to review the guidelines for the input YAML to PGAP. Certain fields are necessary if you intend to submit to GenBank, inlcuding authors and contact info. As for the concern over the number of pseudogenes would recommend that you compare to the genomes in RefSeq for the same species.

anilchauhanhp9 commented 3 years ago

ok, Thank you