Closed Kartikj112 closed 2 years ago
Thank you for your report, Kartik!
the log says:
line 246: CPgapxYamlCtlApplication::Run() --- Unknown organism Kocuria_sp
Hi @Kartikj112 in submol.yaml.text: genus_species: 'Kocuria_sp'
. Please try genus_species: 'Kocuria sp.'
instead. Thanks! See https://github.com/ncbi/pgap/wiki/Input-Files
Thank you for your report, Kartik!
the log says:
line 246: CPgapxYamlCtlApplication::Run() --- Unknown organism Kocuria_sp
It worked. Thankyou again for the help.
Hi @Kartikj112 in submol.yaml.text:
genus_species: 'Kocuria_sp'
. Please trygenus_species: 'Kocuria sp.'
instead. Thanks! See https://github.com/ncbi/pgap/wiki/Input-Files
Very helpful. thankyou.
PGAP is not running when I use my own data
I successfully ran the M. genitalium test genome but when I try to run my own genome it says "PGAP failed, docker exited with rc = 1". I have attached the log file and the .yaml files below.
I'm new to this so a little guidance would be helpful.
Thankyou in advance.
Software versions
input.yaml.txt submol.yaml.txt cwltool.log