[BUG] urlopen error - Githubissues

ncbi / pgap

NCBI Prokaryotic Genome Annotation Pipeline

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[BUG] urlopen error #219

Closed srsfishbein closed 1 year ago

srsfishbein commented 2 years ago

Even though I specify no internet, I'm getting an error about the python package urlopen. Below is the input code + pgap.py -D singularity -n --no-self-update --ignore-all-errors -o /scratch/gdlab/skye.f/EIACD/220819_pgap/out_CDFMT-SF110_assembly_filtered --no-internet /scratch/gdlab/skye.f/EIACD/220819_pgap/filtered/CDFMT-SF110_assembly_filtered_input.yaml and error message: <urlopen error [Errno -3] Temporary failure in name resolution>

azat-badretdin commented 2 years ago

Thank you for your report! This sounds like something that could be a transient error or some network setup on your side. Is this reproducible?