Closed Ahmer1122 closed 1 year ago
Thank you, Ahmer, for your report!
Your log contains this:
Error: VerifySeqids: invalid seqid is used, containing non-local NCBI-style seqid: lcl|16length59293_fdepth=1.00x
Error: VerifySeqids: invalid seqid is used, containing non-local NCBI-style seqid: lcl|46length636_depth=2.15x
Error: VerifySeqids: invalid seqid is used, containing non-local NCBI-style seqid: lcl|48length400_depth=1.13x
verify-seqids: fail
this means that there is something wrong with your seqids. Try to separate lcl|16
from the rest of the FASTA header by space, and the other seqids
Dear Azat, many thanks for your guidance.
It actually worked after I replaced the headers :)
Thanks :)
You are welcome, Ahmer! :-)
Hi All,
I am facing error message (docker exited with rc=1). What baffles me is the test_genomes/MG37/input.yaml executed properly. But the error comes when I am running my data. This is the error message
PGAP version 2022-08-11.build6275 is up to date. Output will be placed in: /home/szweda/Downloads/pgap/SZA14_results.2 PGAP failed, docker exited with rc = 1 Printing log starting from failed job: cwltool.txt
Attached is the cwl log