Error in annotation of test genome using latest version of PGAP

ncbi / pgap

NCBI Prokaryotic Genome Annotation Pipeline

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Error in annotation of test genome using latest version of PGAP #232

Closed GanPENG-git closed 1 year ago

GanPENG-git commented 1 year ago

When I finished installing PGAP and docker I did a test genome annotation, here is my command line, but something went wrong and I don't know how to fix it, would really like someone to help me /home/GP/NCBI/pgap_v2/pgap.py -r -o 1234 input.yaml --no-self-update cwltool.log

azat-badretdin commented 1 year ago

Thank you for your report, user @GanPENG-git ! This is a known issue that I just mitigated by modifying our test case, could you please try to wipe installation and install it again? The other quick fix is to eliminate publications: section in input submol.yaml file under test_genomes/MG37 directory.

GanPENG-git commented 1 year ago

Thank you,@azat-badretdin， I have solved it, thanks again for your help