azat-badretdin
commented
1 year ago Thank you for your report!
Seems like you are using singularity and the error seems to be related to some specifics of your system interaction with singularity
Have you trying rerunning installation process? Are you able to reproduce the result?
Do you know if there are particular peculiarities of "slurum" HPC clusters?
i am trying to install pgap in my directory in HPC (slurum based)
here is the error I got
Writing manifest to image destination Storing signatures FATAL: While making image from oci registry: error fetching image to cache: while building SIF from layers: conveyor failed to get: Error writing blob: rename /home/sangwan/beegfs/tmp/bundle-temp-374066563/oci-put-blob847668213 /home/sangwan/beegfs/tmp/bundle-temp-374066563/blobs/sha256/4123d9bb3322650f55f2a2aa012b62af92fae241726d392a0d17373c919eb6a6: device or resource busy None Traceback (most recent call last): File "/mnt/beegfs/sangwan/pgap/./pgap.py", line 917, in main params = Setup(args) File "/mnt/beegfs/sangwan/pgap/./pgap.py", line 547, in init self.update() File "/mnt/beegfs/sangwan/pgap/./pgap.py", line 713, in update raise Exception(f'installation of some or all of components failed. Please remove {self.data_path}, {self.install_dir}/test_genomes, {self.test_genomes_path} directories and try again.') Exception: installation of some or all of components failed. Please remove /home/sangwan/beegfs/pgap_final/input-2022-12-13.build6494, /home/sangwan/beegfs/pgap_final/test_genomes, /home/sangwan/beegfs/pgap_final/test_genomes-2022-12-13.build6494 directories and try again.