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NCBI Prokaryotic Genome Annotation Pipeline
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[FEATURE REQUEST] Support for Charlie Cloud Docker compatible (but more secure) container system for HPC #291

Closed idlfuente closed 7 months ago

idlfuente commented 7 months ago

Hello.

It would be good if you can add support for CharlieCloud. CharlieCloud overview It is docker compatible. It can handle docker images without any changes. But the commands are different. For that reason, pgap.py doesn't recognized it as installed.

Thanks

george-coulouris commented 7 months ago

Hello,

Unfortunately, we do not have the resources to support additional container systems.

If using the -D option is not sufficient, feel free to modify your local pgap.py so that it recognizes CharlieCloud; I'd start with docker_type_alternatives.

Cheers, George Coulouris