search

ncbi / pgap

NCBI Prokaryotic Genome Annotation Pipeline
Other
307 stars 90 forks source link

Update pgap.py #299

Closed iskold closed 2 months ago

iskold commented 5 months ago

Converted problematic strings to raw strings to avoid syntax warnings with Python 3.12+

azat-badretdin commented 5 months ago

Thank you very much for your contribution, John!

We will start an internal process of reviewing this PR soon

juansebe1 commented 2 months ago

Hello! I already converted problematic strings to raw strings on the lines 133, 978 and 1109 but, when I try to run the annotation script, ./pgap.py updates and the same errors appear again

How can I solve this? Thanks

george-coulouris commented 2 months ago

@juansebe1, specify the --no-self-update option.