ncbi / pgap

NCBI Prokaryotic Genome Annotation Pipeline
Other
316 stars 88 forks source link

[BUG] Installation fails #324

Closed mau-olvera closed 1 month ago

mau-olvera commented 1 month ago

Describe the bug i want to install the latest version of pgap in my popOS computer, so i use ./pgap.py --update to download the database . The download progress worked well. However, when the download progress reaches 100% fails. so, I looked in the issues and found the ./pgap.py --update &>a.log and the error still occurs.

Software versions (please complete the following information):

Log Files pgap_error.tar.gz

Additional context I have already tried deleting the entire downloaded databaseand downloading again, but the same error still occurs.

azat-badretdin commented 1 month ago

Thank you for your report, Mauricio!

it seems that you have some kind of problem with your Docker setup:

permission denied while trying to connect to the Docker daemon socket at unix:///var/run/docker.sock: Post "http://%2Fvar%2Frun%2Fdocker.sock/v1.24/images/create?fromImage=ncbi%2Fpgap&tag=2024-07-18.
build7555": dial unix /var/run/docker.sock: connect: permission denied

I would recommend to seek assistance from your local docker experts.

mau-olvera commented 1 month ago

I managed to install it using the superuser, however, I found that the gibibytes on my computer are not enough to use the program, but thank you very much for taking my issue.

azat-badretdin commented 1 month ago

Glad to here you have achieved that you wanted using superuser privileges, Mauricio!

You are very welcome!