How to use this pipeline for paired end reads

[Hemantcnaik]

Hello,

How can I run this pipeline for paired end reads

Thank you

[r78v10a07]

Hi, Please read the docs in page: https://pm4ngs.readthedocs.io/en/latest/pipelines/chipseqPipeline.html#creating-the-differential-binding-detection-from-chip-seq-data-project

when you run the pm4ngs-chipseq --sample-sheet my-sample-sheet.tsv coomand line, question number six is:

Select sequencing_technology:
1 - single-end
2 - paired-end
Choose from 1, 2 [1]: 

Select 2 for paired-end samples and the whole pipeline will be configure for that.

[Hemantcnaik]

Okay Thank you.