Is there a protocol for creating a custom database?

ncbi / sra-human-scrubber

An SRA tool that takes as input local fastq file from a clinical infection sample, identifies and removes any significant human read, and outputs the edited (cleaned) fastq file that can safely be used for SRA submission.

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Is there a protocol for creating a custom database? #12

Closed rpetit3 closed 3 years ago

rpetit3 commented 3 years ago

I realize this is a human scrubber, but I'm curious, let's say I wanted to create a aligns_to database for the mouse genome. Is there a protocol for than, or do you have code used to create the human database?

multikengineer commented 3 years ago

@rpetit3 - absolutely: look at the manuscript link at the top of the readme here, or for a quick start to https://github.com/ncbi/ngs-tools/tree/tax/tools/tax Have a great weekend.

rpetit3 commented 3 years ago

Awesome! Thank you very much, enjoy your weekend too!