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ncbi / sra-human-scrubber

An SRA tool that takes as input local fastq file from a clinical infection sample, identifies and removes any significant human read, and outputs the edited (cleaned) fastq file that can safely be used for SRA submission.
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Best method to determine current sra-human-scrubber version? #14

Closed rpetit3 closed 1 year ago

rpetit3 commented 3 years ago

How would you suggest users easily determine the current version?

Do you think something like scrub.sh --version would be possible in the next version?

multikengineer commented 3 years ago

Yes I can add something to surface it. The output of course already prints the aligns_to version, and I am going to add a db version tag in the next release as well.

rpetit3 commented 3 years ago

Awesome, thank you very much!

multikengineer commented 1 year ago

Robert - 2.1.0 will output scrubber db version when running test. Hope that suffices, and sorry it took so long.