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ncbi / sra-human-scrubber

An SRA tool that takes as input local fastq file from a clinical infection sample, identifies and removes any significant human read, and outputs the edited (cleaned) fastq file that can safely be used for SRA submission.
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custom database #20

Closed manolis2023 closed 1 year ago

manolis2023 commented 2 years ago

Hi,

how can I create a custom database? Do you have any command or example?

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multikengineer commented 1 year ago

Apologies for having missed this, and I now owe you two wishes for a Happy St. Valentine's Day. To build a database you will want tools found in this repo , and specifically look at this example.