search

ncbi / sra-human-scrubber

An SRA tool that takes as input local fastq file from a clinical infection sample, identifies and removes any significant human read, and outputs the edited (cleaned) fastq file that can safely be used for SRA submission.
Other
42 stars 5 forks source link

Source code? #21

Closed accopeland closed 1 year ago

accopeland commented 1 year ago

Is or will source code for this tool be made available?

multikengineer commented 1 year ago

Alex, I am guessing the source code you refer to is for the binary aligns_to: yes it is available here: https://github.com/ncbi/ngs-tools/tree/tax/tools/tax/src However aligns_to (and perhaps other tools in that directory) are planned to move to a different ncbi GitHub repo in the near future.

accopeland commented 1 year ago

Thank you.

accopeland commented 1 year ago

Closing as resolved