How to tell if this has been run on a sample

ncbi / sra-human-scrubber

An SRA tool that takes as input local fastq file from a clinical infection sample, identifies and removes any significant human read, and outputs the edited (cleaned) fastq file that can safely be used for SRA submission.

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How to tell if this has been run on a sample #29

Open mbhall88 opened 6 months ago

mbhall88 commented 6 months ago

My understanding is this tool is run on an uploaded fastq if requested by the submitter? If so, is there any metadata for a run that tells one of the tool has been run on the fastq? For example, I would like to determine if a run's fastq file has been scrubbed or not.

multikengineer commented 5 months ago

@mbhall88 It appears you are asking if there is a way for you to determine if a submission you made to SRA under your BioProject flagged for "scrubbing" has in fact been scrubbed? If so I think it best if you contact sra@ncbi.nlm.nih.gov with that question. Thank you. for your patience.

mbhall88 commented 5 months ago

Not so much for my own submission, but for any submission. I'll contact that email and ask