Buffer insufficient while executing function within transform module

[apredeus]

Hi,

I have a somewhat strange issue with SRR13997822 - while other 104 SRA files from the same dataset have processed normally. Here's the full error:

2023-01-07T12:38:56 fastq-dump.2.11.0 err: buffer insufficient while executing function within transform module - failed SRR13997822 An error occurred during processing. A report was generated into the file '/nfs/users/nfs_c/cellgeni-su/ncbi_error_report.txt'. If the problem persists, you may consider sending the file to 'sra-tools@ncbi.nlm.nih.gov' for assistance. fastq-dump quit with error code 3

The vdb-validate output seems to be OK:

2023-01-07T12:38:22 vdb-validate.2.11.0 info: Database 'SRR13997822' metadata: md5 ok 2023-01-07T12:38:22 vdb-validate.2.11.0 info: Table 'SEQUENCE' metadata: md5 ok 2023-01-07T12:38:22 vdb-validate.2.11.0 info: Column 'ALTREAD': checksums ok 2023-01-07T12:38:22 vdb-validate.2.11.0 info: Column 'NAME_FMT': checksums ok 2023-01-07T12:38:22 vdb-validate.2.11.0 info: Column 'QUALITY': checksums ok 2023-01-07T12:38:22 vdb-validate.2.11.0 info: Column 'READ': checksums ok 2023-01-07T12:38:22 vdb-validate.2.11.0 info: Column 'SPOT_GROUP': checksums ok 2023-01-07T12:38:22 vdb-validate.2.11.0 info: Column 'X': checksums ok 2023-01-07T12:38:22 vdb-validate.2.11.0 info: Column 'Y': checksums ok 2023-01-07T12:38:22 vdb-validate.2.11.0 warn: type unrecognized while validating database - Database 'SRR13997822' has unrecognized type 'NCBI:SRA:Illumina:db' 2023-01-07T12:38:22 vdb-validate.2.11.0 info: Database 'SRR13997822' is consistent

Pretty much any way I try to get these, I get the same error.

Any suggestions are appreciated!

[klymenko]

Use the latest toolkit.

[apredeus]

Thank you, it worked!