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prefetch not downloading phenotype data #765

Closed Dzhan4 closed 1 year ago

Dzhan4 commented 1 year ago

I know this was closed in another thread a last month, but having a similar issue using Centos version of sra toolkit. Tried with 

./prefetch --ngc ../xxx.ngc ../yyy.krt

and with:

./prefetch.3.0.2 --ngc ../xxx.ngc ../yyy.krt

Same issue, getting following output with empty folders:

2023-01-25T22:37:11 prefetch.3.0.2: Current preference is set to retrieve SRA Normalized Format files with full base quality scores.
2023-01-25T22:37:11 prefetch.3.0.2: Current preference is set to retrieve SRA Normalized Format files with full base quality scores.
2023-01-25T22:37:12 prefetch.3.0.2: Current preference is set to retrieve SRA Normalized Format files with full base quality scores.
2023-01-25T22:37:12 prefetch.3.0.2: Current preference is set to retrieve SRA Normalized Format files with full base quality scores.
2023-01-25T22:37:13 prefetch.3.0.2: Current preference is set to retrieve SRA Normalized Format files with full base quality scores.
2023-01-25T22:37:14 prefetch.3.0.2: Current preference is set to retrieve SRA Normalized Format files with full base quality scores.

Originally posted by @Dzhan4 in https://github.com/ncbi/sra-tools/issues/744#issuecomment-1404319760

Dzhan4 commented 1 year ago

Issue fixed, although I didn't do anything different - just retried on a different day and it's working now.