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stat for bacteria and fungal data #820

Open anmohapa opened 1 year ago

anmohapa commented 1 year ago

Hi , I had configured the NCBI STAT tool as per the steps mentioned in https://www.ncbi.nlm.nih.gov/sra/docs/sra-taxonomy-analysis-tool/ and was able to successfully run the input file given in Example folder. As per my understanding the example folder is for SarsCov2 and hence the virus database virus.dbs is provided as reference.

However with respect to our work we need to identify bacterial and fungal taxas in a given sample.We would like to know how and where do we get to access the bacterial and fungal reference database files ?

tolot27 commented 1 month ago

@anmohapa Did you find a way to fetch the reference kmer db? I'm also looking for it.

IMHO it should be provided by NCBI on every RefSeq release.