search

ncbi / sra-tools

SRA Tools
Other
1.07k stars 243 forks source link

err: insp_get_file_size #906

Closed VikArz02 closed 5 months ago

VikArz02 commented 5 months ago

Hello! Thank you for this great programm. Unfortunatly, i have the error:

My input: ~/Soft/sratoolkit.3.0.10-ubuntu64/bin/fasterq-dump -p -e 1 --outdir raw_sra/ SRR13997107

And the error is 2024-02-01T13:33:58 fasterq-dump.3.0.10 err: insp_get_file_size( 'https://sra-downloadb.be-md.ncbi.nlm.nih.gov/sos3/sra-pub-zq-22/SRR013/13997/SRR13997107/SRR13997107.lite.1', remotely = YES ) -> RC(rcNS,rcFile,rcCreating,rcTimeout,rcExhausted)

How i can solve it?

durbrow commented 5 months ago

There isn't really anything that you can do to fix it other than to try again later. The problem is on the remote side, i.e. the servers at NCBI.

You could try prefetch SRR13997107 followed by fasterq-dump ... SRR13997107. prefetch might still timeout, but it is resumable.