prefetch - failed to verify error

uasic commented 6 months ago

Hello, I am trying to download only some runs from PRJNA688881 with the following command:

.\prefetch --output-directory healthy_sra -p -H 5 SRR13336836 SRR13336835 SRR13336834 SRR13336833 SRR13336832 SRR13336830 SRR13336829 SRR13336831 SRR13336826 SRR13336882 SRR13336825 SRR13336887 SRR13336885 SRR13336883 SRR13336881 SRR13336871 SRR13336880 SRR13336879 SRR13336877 SRR13336876 SRR13336933 SRR13336875 SRR13336866 SRR13336873 SRR13336870 SRR13336860 SRR13336859 SRR13336868 SRR13336862 SRR13336867 SRR13336902 SRR13336900 SRR13336858 SRR13336898 SRR13336901 SRR13336896 SRR13336894 SRR13336856 SRR13336892 SRR13336853 SRR13336891 SRR13336893 SRR13336889 SRR13336886 SRR13336888 SRR13336852

In case of most of the downloaded samples I have received following error: 2024-03-23T10:46:11 prefetch.3.0.7 int: no error - failed to verify 2024-03-23T10:46:11 prefetch.3.0.7: 1) failed to download 'SRR13336836': RC(rcFS,rcFile,rcReading,rcFile,rcCorrupt)

Similar problem was described here: https://github.com/ncbi/sra-tools/issues/568.

.sra files are downloaded together with .sra.prf files in each folder.

If I run curl https://locate.ncbi.nlm.nih.gov/sdl/2/retrieve?acc=SRR13336836 I get this output:

StatusCode : 200 StatusDescription : OK Content : {"version": "2","result": [{"bundle": "SRR13336836","status": 200,"msg": "ok","files": [{"object": "srapub|SRR13336836","accession": "SRR13336836","type": "sra","name": "SRR13336836","size": 505702978... RawContent : HTTP/1.1 200 OK Strict-Transport-Security: max-age=31536000; includeSubDomains; preload Referrer-Policy: origin-when-cross-origin Content-Security-Policy: upgrade-insecure-requests NCBI-SID: 890F3... Forms : {} Headers : {[Strict-Transport-Security, max-age=31536000; includeSubDomains; preload], [Referrer-Policy, origin-when-cross-origin], [Content-Security-Policy, upgrade-insecure-requests], [NCBI-SID, 890F3B9A5FEFC2E1_0015SID]...} Images : {} InputFields : {} Links : {} ParsedHtml : mshtml.HTMLDocumentClass RawContentLength : 426

Thank you in advance.

klymenko commented 6 months ago

What is the full output of curl https://locate.ncbi.nlm.nih.gov/sdl/2/retrieve?acc=SRR13336836 ? You truncated Content JSON.

Are you running on Windows? What terminal program do you use?

uasic commented 6 months ago

The truncated output above was the output of curl https://locate.ncbi.nlm.nih.gov/sdl/2/retrieve?acc=SRR13336836 in PowerShell.

This is output from git bash:

{ "version": "2", "result": [ { "bundle": "SRR13336836", "status": 200, "msg": "ok", "files": [ { "object": "srapub|SRR13336836", "accession": "SRR13336836", "type": "sra", "name": "SRR13336836", "size": 5057029785, "md5": "bffa179a068bf7203d19a93bdeab9e63", "modificationDate": "2021-01-01T15:18:04Z", "locations": [ { "service": "s3", "region": "us-east-1", "link": "https://sra-pub-run-odp.s3.amazonaws.com/sra/SRR13336836/SRR13336836" } ] } ] } ] }

For downloading I was always using PowerShell.

klymenko commented 6 months ago

what is the output of: srapath SRR13336836

uasic commented 6 months ago

GitBash: bash: srapath: command not found

PowerShell: srapath : The term 'srapath' is not recognized as the name of a cmdlet, function, script file, or operable program. Check the spelling of the name, or if a path was included, verify that the path is correct and try again. At line:1 char:1

srapath SRR13336836


+ CategoryInfo          : ObjectNotFound: (srapath:String) [], CommandNotFoundException
+ FullyQualifiedErrorId : CommandNotFoundException

klymenko commented 6 months ago

run it from the same directory where you ran prefetch

uasic commented 6 months ago

https://sra-pub-run-odp.s3.amazonaws.com/sra/SRR13336836/SRR13336836 (PowerShell, still not found in Bash)

klymenko commented 6 months ago

Was SRR13336836 directory created in directory where you ran prefetch?

uasic commented 6 months ago

Yes - download creates SRR13336836 folder with .sra file and .sra.prf.

More detailes below:

This is the command I run, with error:

Install the latest PowerShell for new features and improvements! https://aka.ms/PSWindows

PS E:\phd-sekvence\wgs> prefetch --output-directory healthy_sra -p -H 5 SRR13336836 SRR13336835 SRR13336834 SRR13336833 SRR13336832 SRR13336830 SRR13336829 SRR13336831 SRR13336826 SRR13336882 SRR13336825 SRR13336887 SRR13336885 SRR13336883 SRR13336881 SRR13336871 SRR13336880 SRR13336879 SRR13336877 SRR13336876 SRR13336933 SRR13336875 SRR13336866 SRR13336873 SRR13336870 SRR13336860 SRR13336859 SRR13336868 SRR13336862 SRR13336867 SRR13336902 SRR13336900 SRR13336858 SRR13336898 SRR13336901 SRR13336896 SRR13336894 SRR13336856 SRR13336892 SRR13336853 SRR13336891 SRR13336893 SRR13336889 SRR13336886 SRR13336888 SRR1333685

2024-03-26T08:30:27 prefetch.3.0.7: Current preference is set to retrieve SRA Normalized Format files with full base quality scores. 2024-03-26T08:30:27 prefetch.3.0.7: 1) Downloading 'SRR13336836'... 2024-03-26T08:30:28 prefetch.3.0.7: SRA Normalized Format file is being retrieved, if this is different from your preference, it may be due to current file availability. 2024-03-26T08:30:28 prefetch.3.0.7: Downloading via HTTPS... |-------------------------------------------------- 100% 2024-03-26T10:09:22 prefetch.3.0.7: HTTPS download succeed 2024-03-26T10:09:22 prefetch.3.0.7: verifying 'SRR13336836'... 2024-03-26T10:40:21 prefetch.3.0.7 int: no error - failed to verify 2024-03-26T10:40:21 prefetch.3.0.7: 1) failed to download 'SRR13336836': RC(rcFS,rcFile,rcReading,rcFile,rcCorrupt)

ls and pwd commands:

PS E:\phd-sekvence\wgs> pwd

Path

E:\phd-sekvence\wgs

PS E:\phd-sekvence\wgs> ls

Directory: E:\phd-sekvence\wgs

Mode LastWriteTime Length Name

d----- 18. 02. 2024 13:46 PRJNA516054_fastq d----- 27. 02. 2024 20:22 PRJNA686821_fastq d----- 27. 02. 2024 20:22 PRJNA686821_sra d----- 27. 02. 2024 20:22 PRJNA782533_fastq d----- 27. 02. 2024 20:23 PRJNA782533_sra d----- 27. 02. 2024 20:23 PRJNA895372_fastq d----- 27. 02. 2024 20:23 PRJNA895372_sra d----- 27. 02. 2024 20:23 PRJNA530620_fastq d----- 27. 02. 2024 20:23 PRJNA530620_sra d----- 27. 02. 2024 20:23 PRJNA845014_fastq d----- 27. 02. 2024 20:24 PRJNA845014_sra d----- 27. 02. 2024 21:12 healthy_sra d----- 27. 02. 2024 21:13 healthy_fastq d----- 1. 03. 2024 08:00 ponavljanje_fastq d----- 24. 03. 2024 17:50 sra_533_done d----- 26. 03. 2024 10:26 fasterq.tmp..0 -a---- 26. 03. 2024 10:26 1276 sra2fastq.py -a---- 15. 03. 2024 19:15 1271 sra2fastq2.py

PS E:\phd-sekvence\wgs>

klymenko commented 6 months ago

What is the size and md5 of SRR13336836/SRR13336836.sra?

uasic commented 6 months ago

The size iz 4,9 GB and md5 from PowerShell is:

PS E:\phd-sekvence\wgs\healthy_sra\SRR13336836> ls

    Directory: E:\phd-sekvence\wgs\healthy_sra\SRR13336836

Mode                 LastWriteTime         Length Name
----                 -------------         ------ ----
-a----      26. 03. 2024     11:09            160 SRR13336836.sra.prf
-a----      26. 03. 2024     11:09     5057029785 SRR13336836.sra

PS E:\phd-sekvence\wgs\healthy_sra\SRR13336836> Get-FileHash .\SRR13336836.sra -Algorithm MD5

Algorithm       Hash                                                                   Path
---------       ----                                                                   ----
MD5             1EE3F0353FBCD5B95B88E4E535206A0F                                       E:\phd-sekvence\wgs\healthy_s...

PS E:\phd-sekvence\wgs\healthy_sra\SRR13336836> Get-FileHash .\SRR13336836.sra.prf -Algorithm MD5

Algorithm       Hash                                                                   Path
---------       ----                                                                   ----
MD5             5B81AEFC2FD38329285E352DBBFF3489                                       E:\phd-sekvence\wgs\healthy_s...

klymenko commented 6 months ago

md5 of downloaded SRR13336836 does not match provided by SDL.

klymenko commented 6 months ago

What is the output of the following: certutil -hashfile SRR13336836.sra MD5

klymenko commented 6 months ago

Do you run it on cloud?

klymenko commented 6 months ago

Where did you get sratoolkit?

uasic commented 6 months ago

PS F:\sratoolkit.3.1.0-win64\bin> certutil -hashfile SRR13336836.sra MD5
CertUtil: -hashfile command FAILED: 0x80070002 (WIN32: 2 ERROR_FILE_NOT_FOUND)
CertUtil: The system cannot find the file specified.

or

PS F:\sratoolkit.3.0.7-win64\bin> certutil -hashfile SRR13336836.sra MD5
CertUtil: -hashfile command FAILED: 0x80070002 (WIN32: 2 ERROR_FILE_NOT_FOUND)
CertUtil: The system cannot find the file specified.
PS F:\sratoolkit.3.0.7-win64\bin>

I do not run it on cloud - locally on my computer, saving them directly on external hard drive.

sratoolkit was downloaded from GitHub: https://github.com/ncbi/sra-tools/wiki/02.-Installing-SRA-Toolkit

I've also tried download sequences from PRJNA845014 during the night, same error in the morning:

PS F:\sratoolkit.3.1.0-win64\bin> .\prefetch --output-directory F:\phd-sekvence\wgs\PRJNA845014_sra -p -H 5 PRJNA845014
2024-03-26T20:10:32 prefetch.3.1.0 int: string unexpected while executing query within virtual file system module - multiple response SRR URLs for the same service 's3'
2024-03-26T20:12:23 prefetch.3.1.0: 1) Downloading 'SRR19537292'...
2024-03-26T20:12:43 prefetch.3.1.0: SRA Normalized Format file is being retrieved, if this is different from your preference, it may be due to current file availability.
2024-03-26T20:12:44 prefetch.3.1.0:  Downloading via HTTPS...
|-------------------------------------------------- 100%
2024-03-26T20:32:20 prefetch.3.1.0:  HTTPS download succeed
2024-03-26T20:32:21 prefetch.3.1.0:   verifying 'SRR19537292'...
2024-03-26T20:42:14 prefetch.3.1.0:  'SRR19537292' is valid
2024-03-26T20:42:14 prefetch.3.1.0: 1) 'SRR19537292' was downloaded successfully
2024-03-26T20:42:14 prefetch.3.1.0: 1) Downloading 'SRR19537293'...
2024-03-26T20:42:15 prefetch.3.1.0: SRA Normalized Format file is being retrieved, if this is different from your preference, it may be due to current file availability.
2024-03-26T20:42:15 prefetch.3.1.0:  Downloading via HTTPS...
|-------------------------------------------------- 100%
2024-03-26T21:11:38 prefetch.3.1.0:  HTTPS download succeed
2024-03-26T21:11:38 prefetch.3.1.0:   verifying 'SRR19537293'...
2024-03-26T21:30:01 prefetch.3.1.0 int: no error - failed to verify
2024-03-26T21:30:01 prefetch.3.1.0: 1) failed to download 'SRR19537293': RC(rcFS,rcFile,rcReading,rcFile,rcCorrupt)

PS F:\sratoolkit.3.1.0-win64\bin> certutil -hashfile SRR13336836.sra MD5
CertUtil: -hashfile command FAILED: 0x80070002 (WIN32: 2 ERROR_FILE_NOT_FOUND)
CertUtil: The system cannot find the file specified.
PS F:\sratoolkit.3.1.0-win64\bin>

klymenko commented 6 months ago

What version of Windows do you have?

Did you succeed to download any run?

klymenko commented 6 months ago

@uasic, do you need help?

uasic commented 6 months ago

Sorry for late reply - I am out of office till Sunday. I need to check about the windows but I think it is windows 11. From sequences above, SRR19537292 was downloaded without any errors. The same command gave error for the next sequence (SRR19537293).

klymenko commented 6 months ago

What is the output of the following?

cd E:\phd-sekvence\wgs\healthy_sra
F:\sratoolkit.3.1.0-win64\bin\test-sra SRR13336836

uasic commented 6 months ago

One correction - I have Windows 10 Home on this computer. The output is:

<Test-sra>
  <Ngs>
    <Latest>
      <ncbi-vdb version="2.11.2"/>
      <ngs-sdk version="2.11.2"/>
    </Latest>
    <LibManager.properties/>
    <ncbi-vdb>
    </ncbi-vdb>
    <ngs-sdk>
    </ngs-sdk>
  </Ngs>
  <Version>
NCBI SRA Toolkit release version: 3.1.0.<br/>
Latest available NCBI SRA Toolkit release version: 3.1.0.<br/>
You already have the latest version of SRA Toolkit.
  </Version>
  <Os>Microsoft Windows. Version 6.2 (Build 9200: )</Os>
  <Ascp>
ascp_locate = RC(rcNS,rcFile,rcCopying,rcFile,rcNotFound)
    <MaxRate>450m</MaxRate>
    <Disabled>false</Disabled>
  </Ascp>
  <Network>
    <KNSManager GetHTTPProxyEnabled="false">
    </KNSManager>
    <UserAgent>windows64 sra-toolkit test-sra.3.1 (phid=noc8175nos,libc=)</UserAgent>
    <DnsEndpoint domain="www.ncbi.nlm.nih.gov" port="80" address="ipv4: 130.14.29.110 : 80" time="15 ms"/>
    <DnsEndpoint domain="www.ncbi.nlm.nih.gov" port="443" address="ipv4: 130.14.29.110 : 443" time="0 ms"/>
    <KNSManagerMakeRequest url="https://ftp-trace.ncbi.nlm.nih.gov/sra/sdk/current/sratoolkit.current.version" time="1563 ms"/>
  </Network>
  <Repositories>
    <User name="public"/>
      <Root found="false">/c/Users/urska/Desktop/PhD/SRA_Location of user-repository</Root>
      <Found>/c/Users/urska/Desktop/PhD</Found>
      <Space free="26222448" total="124372988" units="KBytes"/>
    </User>
  </Repositories>
<Object>

SRR13336836 Dir - Database <br/>
<Resolve>
  <Query name="SRR13336836">
      Local:              /f/phd-sekvence/wgs/healthy_sra/SRR13336836/SRR13336836.sra File 5,057,029,785 Database <br/>
      Remote HttpFasp:    https://sra-pub-run-odp.s3.amazonaws.com/sra/SRR13336836/SRR13336836 5,057,029,785 Database <br/>
      Cache HttpFasp:     /c/Users/urska/Desktop/PhD/SRA_Location of user-repository/sra/SRR13336836.sra NotFound - NotFound <br/>
      Cache.cache HttpFasp: /c/Users/urska/Desktop/PhD/SRA_Location of user-repository/sra/SRR13336836.sra.cache NotFound - NotFound <br/>

      VResolverQuery(SRR13336836, (null), local, remote, cache)= RC(rcNoErr)<br/>
      Local:              /f/phd-sekvence/wgs/healthy_sra/SRR13336836/SRR13336836.sra File 5,057,029,785 Database <br/>

    <Timer>
      VResolverQuery(SRR13336836, (null), local, remote=NULL, cache=NULL)= RC(rcNoErr)<br/>
      Local:              /f/phd-sekvence/wgs/healthy_sra/SRR13336836/SRR13336836.sra File 5,057,029,785 Database <br/>

      VResolverQuery(SRR13336836, (null), local=NULL, remote, cache)= RC(rcNoErr)<br/>
      Remote HttpFasp:    https://sra-pub-run-odp.s3.amazonaws.com/sra/SRR13336836/SRR13336836 <br/>
      Cache HttpFasp:     /c/Users/urska/Desktop/PhD/SRA_Location of user-repository/sra/SRR13336836.sra NotFound - NotFound <br/>
      Cache.cache HttpFasp: /c/Users/urska/Desktop/PhD/SRA_Location of user-repository/sra/SRR13336836.sra.cache NotFound - NotFound <br/>

      <Time time="31 ms"/>
    </Timer>
  </Query>
</Resolve>
  <Network>
    <Cgi>
    <Response time="703 ms">{"version": "2","result": [{"bundle": "SRR13336836","status": 200,"msg": "ok","files": [{"object": "srapub|SRR13336836","accession": "SRR13336836","type": "sra","name": "SRR13336836","size": 5057029785,"md5": "bffa179a068bf7203d19a93bdeab9e63","modificationDate": "2021-01-01T15:18:04Z","locations": [{"service": "s3","region": "us-east-1","link": "https://sra-pub-run-odp.s3.amazonaws.com/sra/SRR13336836/SRR13336836"}]}]}]}
</Response>
    </Cgi>
    <Ranges>
      <Get protocol="https">
        <Request host="sra-pub-run-odp.s3.amazonaws.com">
GET /sra/SRR13336836/SRR13336836 HTTP/1.1
Host: sra-pub-run-odp.s3.amazonaws.com
Range: bytes=0-4095
Accept: */*
X-SRA-Release: 3.1
X-VDB-Release: 3.1
User-Agent: windows64 sra-toolkit test-sra.3.1 (phid=noc8175nos,libc=)

        </Request>
        <Response>
HTTP/1.1 206 Partial Content
Accept-Ranges: bytes
Content-Length: 4096
Content-Range: bytes 0-4095/5057029785
Content-Type: binary/octet-stream
Date: Mon, 01 Apr 2024 19:35:49 GMT
ETag: "1b9d4d85824ce726d29c1bb86297e8fc-603"
Last-Modified: Tue, 08 Jun 2021 01:11:05 GMT
Server: AmazonS3
x-amz-id-2: UtcHoGYfGCIkWxfppI8I8l4MqT+jxZcsBA7PGU8tOqVJ4yuWQ4fey72GrRje305ZQKZBBSaGqPtI7rtH2AbZVDnr9vS1BAlJ
x-amz-request-id: WZKHRRZFQMNGBAZ3
x-amz-tagging-count: 1
x-amz-version-id: .SMwqcp5ZGUBnr9SU0Jah1O0M9.VCvUo
        </Response>
      </Get>
      <Head protocol="https">
        <Request host="sra-pub-run-odp.s3.amazonaws.com">
HEAD /sra/SRR13336836/SRR13336836 HTTP/1.1
Host: sra-pub-run-odp.s3.amazonaws.com
Accept: */*
X-SRA-Release: 3.1
X-VDB-Release: 3.1
User-Agent: windows64 sra-toolkit test-sra.3.1 (phid=noc8175nos,libc=)

        </Request>
        <Response>
HTTP/1.1 200 OK
Accept-Ranges: bytes
Content-Length: 5057029785
Content-Type: binary/octet-stream
Date: Mon, 01 Apr 2024 19:35:51 GMT
ETag: "1b9d4d85824ce726d29c1bb86297e8fc-603"
Last-Modified: Tue, 08 Jun 2021 01:11:05 GMT
Server: AmazonS3
x-amz-id-2: 8bA9JyMiS9NvCVcsuYoIZClg67BQQveef6xqAlX99IjEAlXl1Yv+Jc+Gtroqe/mfvWhyIia6k5Siu1mmFX22jB7ckE5RCyaZ
x-amz-request-id: 7ZXWPSR8RFGJGE4S
x-amz-tagging-count: 1
x-amz-version-id: .SMwqcp5ZGUBnr9SU0Jah1O0M9.VCvUo
        </Response>
      </Head>
    </Ranges>
  </Network>
  <Dependencies type="missing">
    VDBDependenciesCount(missing)=0
  </Dependencies>
  <Dependencies type="all">
    VDBDependenciesCount(all)=0
  </Dependencies>
</Object>
<Report>
 <Run>
  <Date>
   <Start value="Mon Apr 1 2024 9:35:15 PM"/>
   <End value="Mon Apr 1 2024 9:35:50 PM"/>
  </Date>
  <Home name="USERPROFILE" value="C:\Users\urska"/>
  <Cwd>/f/phd-sekvence/wgs/healthy_sra</Cwd>
  <CommandLine argc="2">
   <Arg index="0" value="/F/sratoolkit.3.1.0-win64/bin/test-sra.exe"/>
   <Arg index="1" value="SRR13336836"/>
  </CommandLine>
  <Result rc="RC(rcNoErr)"/>
  <User admin="false"/>
 </Run>
 <Configuration>
  <Files count="4">
   <File name="/c/Users/urska/.ncbi/user-settings.mkfg"/>
   <File name="/f/sratoolkit.3.1.0-win64/bin/ncbi/certs.kfg"/>
   <File name="/f/sratoolkit.3.1.0-win64/bin/ncbi/default.kfg"/>
   <File name="/f/sratoolkit.3.1.0-win64/bin/ncbi/vdb-copy.kfg"/>
  </Files>
  <refseq state="not found"/>
  <krypto state="pwfile: not found"/>
  <sra>
   <quality_type>raw_scores</quality_type>
  </sra>
  <Config>
  <ConfigurationFiles>
/c/Users/urska/.ncbi/user-settings.mkfg
/f/sratoolkit.3.1.0-win64/bin/ncbi/certs.kfg
/f/sratoolkit.3.1.0-win64/bin/ncbi/default.kfg
/f/sratoolkit.3.1.0-win64/bin/ncbi/vdb-copy.kfg
    </ConfigurationFiles>
    <APPNAME>"test-sra"</APPNAME>
    <APPPATH>"/f/sratoolkit.3.1.0-win64/bin"</APPPATH>
    <BUILD>"RELEASE"</BUILD>
    <HOME>"/c/Users/urska"</HOME>
    <HOST></HOST>
    <LIBS>
      <GUID>"8175aae6-0cde-4c3c-8483-dd01e94fee10"</GUID>
    </LIBS>
    <NCBI_HOME>"/c/Users/urska/.ncbi"</NCBI_HOME>
    <NCBI_SETTINGS>"/c/Users/urska/.ncbi/user-settings.mkfg"</NCBI_SETTINGS>
    <OS>"win"</OS>
    <PWD>"/f/phd-sekvence/wgs/healthy_sra"</PWD>
    <USER></USER>
    <VDBCOPY><!-- skipped --></VDBCOPY>
    <VDB_CONFIG></VDB_CONFIG>
    <VDB_ROOT></VDB_ROOT>
    <config>
      <default>"false"</default>
    </config>
    <kfg>
      <arch>
        <bits>"64"</bits>
        <name></name>
      </arch>
      <dir>"/c/Users/urska/.ncbi"</dir>
      <name>"user-settings.mkfg"</name>
    </kfg>
    <libs>
      <cache_amount>"10"</cache_amount>
      <cloud>
        <accept_aws_charges>"false"</accept_aws_charges>
        <report_instance_identity>"true"</report_instance_identity>
      </cloud>
    </libs>
    <repository>
      <remote>
        <main>
          <SDL.2>
            <resolver-cgi>"https://locate.ncbi.nlm.nih.gov/sdl/2/retrieve"</resolver-cgi>
          </SDL.2>
        </main>
        <protected>
          <SDL.2>
            <resolver-cgi>"https://locate.ncbi.nlm.nih.gov/sdl/2/retrieve"</resolver-cgi>
          </SDL.2>
        </protected>
      </remote>
      <user>
        <ad>
          <public>
            <apps>
              <file>
                <volumes>
                  <flat></flat>
                  <flatAd>"."</flatAd>
                </volumes>
              </file>
              <refseq>
                <volumes>
                  <refseqAd>"."</refseqAd>
                </volumes>
              </refseq>
              <sra>
                <volumes>
                  <sraAd>"."</sraAd>
                </volumes>
              </sra>
              <sraPileup>
                <volumes>
                  <ad>"."</ad>
                </volumes>
              </sraPileup>
              <sraRealign>
                <volumes>
                  <ad>"."</ad>
                </volumes>
              </sraRealign>
              <wgs>
                <volumes>
                  <wgsAd>"."</wgsAd>
                </volumes>
              </wgs>
            </apps>
            <root>"."</root>
          </public>
        </ad>
        <default-path>"/c/Users/urska/ncbi"</default-path>
        <main>
          <public>
            <apps>
              <file>
                <volumes>
                  <flat>"files"</flat>
                </volumes>
              </file>
              <nakmer>
                <volumes>
                  <nakmerFlat>"nannot"</nakmerFlat>
                </volumes>
              </nakmer>
              <nannot>
                <volumes>
                  <nannotFlat>"nannot"</nannotFlat>
                </volumes>
              </nannot>
              <refseq>
                <volumes>
                  <refseq>"refseq"</refseq>
                </volumes>
              </refseq>
              <sra>
                <volumes>
                  <sraFlat>"sra"</sraFlat>
                </volumes>
              </sra>
              <sraPileup>
                <volumes>
                  <withExtFlat>"sra"</withExtFlat>
                </volumes>
              </sraPileup>
              <sraRealign>
                <volumes>
                  <withExtFlat>"sra"</withExtFlat>
                </volumes>
              </sraRealign>
              <wgs>
                <volumes>
                  <wgsFlat>"wgs"</wgsFlat>
                </volumes>
              </wgs>
            </apps>
            <root>"/c/Users/urska/Desktop/PhD/SRA_Location of user-repository"</root>
          </public>
        </main>
      </user>
    </repository>
    <sra>
      <quality_type>"raw_scores"</quality_type>
    </sra>
    <strings>
      <sdl>"https://locate.ncbi.nlm.nih.gov/sdl/2/retrieve"</sdl>
    </strings>
    <tls>
      <ca.crt>
        <ncbi1>"-----BEGIN CERTIFICATE-----\x0D\x0AMIIDrzCCApegAwIBAgIQCDvgVpBCRrGhdWrJWZHHSjANBgkqhkiG9w0BAQUFADBh\x0D\x0AMQswCQYDVQQGEwJVUzEVMBMGA1UEChMMRGlnaUNlcnQgSW5jMRkwFwYDVQQLExB3\x0D\x0Ad3cuZGlnaWNlcnQuY29tMSAwHgYDVQQDExdEaWdpQ2VydCBHbG9iYWwgUm9vdCBD\x0D\x0AQTAeFw0wNjExMTAwMDAwMDBaFw0zMTExMTAwMDAwMDBaMGExCzAJBgNVBAYTAlVT\x0D\x0AMRUwEwYDVQQKEwxEaWdpQ2VydCBJbmMxGTAXBgNVBAsTEHd3dy5kaWdpY2VydC5j\x0D\x0Ab20xIDAeBgNVBAMTF0RpZ2lDZXJ0IEdsb2JhbCBSb290IENBMIIBIjANBgkqhkiG\x0D\x0A9w0BAQEFAAOCAQ8AMIIBCgKCAQEA4jvhEXLeqKTTo1eqUKKPC3eQyaKl7hLOllsB\x0D\x0ACSDMAZOnTjC3U/dDxGkAV53ijSLdhwZAAIEJzs4bg7/fzTtxRuLWZscFs3YnFo97\x0D\x0Anh6Vfe63SKMI2tavegw5BmV/Sl0fvBf4q77uKNd0f3p4mVmFaG5cIzJLv07A6Fpt\x0D\x0A43C/dxC//AH2hdmoRBBYMql1GNXRor5H4idq9Joz+EkIYIvUX7Q6hL+hqkpMfT7P\x0D\x0AT19sdl6gSzeRntwi5m3OFBqOasv+zbMUZBfHWymeMr/y7vrTC0LUq7dBMtoM1O/4\x0D\x0AgdW7jVg/tRvoSSiicNoxBN33shbyTApOB6jtSj1etX+jkMOvJwIDAQABo2MwYTAO\x0D\x0ABgNVHQ8BAf8EBAMCAYYwDwYDVR0TAQH/BAUwAwEB/zAdBgNVHQ4EFgQUA95QNVbR\x0D\x0ATLtm8KPiGxvDl7I90VUwHwYDVR0jBBgwFoAUA95QNVbRTLtm8KPiGxvDl7I90VUw\x0D\x0ADQYJKoZIhvcNAQEFBQADggEBAMucN6pIExIK+t1EnE9SsPTfrgT1eXkIoyQY/Esr\x0D\x0AhMAtudXH/vTBH1jLuG2cenTnmCmrEbXjcKChzUyImZOMkXDiqw8cvpOp/2PV5Adg\x0D\x0A06O/nVsJ8dWO41P0jmP6P6fbtGbfYmbW0W5BjfIttep3Sp+dWOIrWcBAI+0tKIJF\x0D\x0APnlUkiaY4IBIqDfv8NZ5YBberOgOzW6sRBc4L0na4UU+Krk2U886UAb3LujEV0ls\x0D\x0AYSEY1QSteDwsOoBrp+uvFRTp2InBuThs4pFsiv9kuXclVzDAGySj4dzp30d8tbQk\x0D\x0ACAUw7C29C79Fv1C5qfPrmAESrciIxpg0X40KPMbp1ZWVbd4wOTAeBggrBgEFBQcD\x0D\x0ABAYIKwYBBQUHAwEGCCsGAQUFBwMDDBdEaWdpQ2VydCBHbG9iYWwgUm9vdCBDQQ==\x0D\x0A-----END CERTIFICATE-----\x0D\x0A"</ncbi1>
        <ncbi2>"-----BEGIN CERTIFICATE-----\x0D\x0AMIIDxTCCAq2gAwIBAgIQAqxcJmoLQJuPC3nyrkYldzANBgkqhkiG9w0BAQUFADBs\x0D\x0AMQswCQYDVQQGEwJVUzEVMBMGA1UEChMMRGlnaUNlcnQgSW5jMRkwFwYDVQQLExB3\x0D\x0Ad3cuZGlnaWNlcnQuY29tMSswKQYDVQQDEyJEaWdpQ2VydCBIaWdoIEFzc3VyYW5j\x0D\x0AZSBFViBSb290IENBMB4XDTA2MTExMDAwMDAwMFoXDTMxMTExMDAwMDAwMFowbDEL\x0D\x0AMAkGA1UEBhMCVVMxFTATBgNVBAoTDERpZ2lDZXJ0IEluYzEZMBcGA1UECxMQd3d3\x0D\x0ALmRpZ2ljZXJ0LmNvbTErMCkGA1UEAxMiRGlnaUNlcnQgSGlnaCBBc3N1cmFuY2Ug\x0D\x0ARVYgUm9vdCBDQTCCASIwDQYJKoZIhvcNAQEBBQADggEPADCCAQoCggEBAMbM5XPm\x0D\x0A+9S75S0tMqbf5YE/yc0lSbZxKsPVlDRnogocsF9ppkCxxLeyj9CYpKlBWTrT3JTW\x0D\x0APNt0OKRKzE0lgvdKpVMSOO7zSW1xkX5jtqumX8OkhPhPYlG++MXs2ziS4wblCJEM\x0D\x0AxChBVfvLWokVfnHoNb9Ncgk9vjo4UFt3MRuNs8ckRZqnrG0AFFoEt7oT61EKmEFB\x0D\x0AIk5lYYeBQVCmeVyJ3hlKV9Uu5l0cUyx+mM0aBhakaHPQNAQTXKFx01p8VdteZOE3\x0D\x0AhzBWBOURtCmAEvF5OYiiAhF8J2a3iLd48soKqDirCmTCv2ZdlYTBoSUeh10aUAsg\x0D\x0AEsxBu24LUTi4S8sCAwEAAaNjMGEwDgYDVR0PAQH/BAQDAgGGMA8GA1UdEwEB/wQF\x0D\x0AMAMBAf8wHQYDVR0OBBYEFLE+w2kD+L9HAdSYJhoIAu9jZCvDMB8GA1UdIwQYMBaA\x0D\x0AFLE+w2kD+L9HAdSYJhoIAu9jZCvDMA0GCSqGSIb3DQEBBQUAA4IBAQAcGgaX3Nec\x0D\x0AnzyIZgYIVyHbIUf4KmeqvxgydkAQV8GK83rZEWWONfqe/EW1ntlMMUu4kehDLI6z\x0D\x0AeM7b41N5cdblIZQB2lWHmiRk9opmzN6cN82oNLFpmyPInngiK3BD41VHMWEZ71jF\x0D\x0AhS9OMPagMRYjyOfiZRYzy78aG6A9+MpeizGLYAiJLQwGXFK3xPkKmNEVX58Svnw2\x0D\x0AYzi9RKR/5CYrCsSXaQ3pjOLAEFe4yHYSkVXySGnYvCoCWw9E1CAx2/S6cCZdkGCe\x0D\x0AvEsXCS+0yx5DaMkHJ8HSXPfqIbloEpw8nL+e/IBcm2PN7EeqJSdnoDfzAIJ9VNep\x0D\x0A+OkuE6N36B9KMEQwHgYIKwYBBQUHAwQGCCsGAQUFBwMBBggrBgEFBQcDAwwiRGln\x0D\x0AaUNlcnQgSGlnaCBBc3N1cmFuY2UgRVYgUm9vdCBDQQ==\x0D\x0A-----END CERTIFICATE-----\x0D\x0A"</ncbi2>
      </ca.crt>
    </tls>
    <tools>
      <ascp>
        <max_rate>"450m"</max_rate>
      </ascp>
    </tools>
    <vdb>
      <lib>
        <paths>
          <kfg>"/f/sratoolkit.3.1.0-win64/bin"</kfg>
        </paths>
      </lib>
      <schema>
        <version>"2"</version>
      </schema>
    </vdb>
  </Config>
  <RemoteAccess available="true"/>
  <CurrentProtectedRepository found="false"/>
 </Configuration>
 <Object path="SRR13336836" type="unknown">
 </Object>
 <SOFTWARE>
  <VDBLibrary vers="3.1"/>
  <Build static="true">
   <Module name=""/>
  </Build>
  <Tool date="Feb 23 2024" name="/F/sratoolkit.3.1.0-win64/bin/test-sra.exe" vers="3.1">
   <Binary path="/f/sratoolkit.3.1.0-win64/bin/test-sra.exe" type="file" md5="8be9fe392d4a6a8d08bc25ae85a2daac"/>
  </Tool>
 </SOFTWARE>
 <Env>
 </Env>
</Report>

</Test-sra>

klymenko commented 5 months ago

@uasic, please run the following and post the full output:

prefetch SRR13336836 -fy
vdb-validate SRR13336836

uasic commented 5 months ago

PS F:\sratoolkit.3.1.0-win64\bin> .\prefetch SRR13336836 -fy

2024-04-19T10:19:48 prefetch.3.1.0: Current preference is set to retrieve SRA Normalized Format files with full base quality scores.
2024-04-19T10:19:50 prefetch.3.1.0: 1) Downloading 'SRR13336836'...
2024-04-19T10:19:50 prefetch.3.1.0 warn: lock exists while copying file - Lock file /c/Users/urska/Desktop/PhD/SRA_Location of user-repository/sra/SRR13336836.sra.lock exists: download canceled
2024-04-19T10:19:50 prefetch.3.1.0: 1) failed to download 'SRR13336836': RC(rcExe,rcFile,rcCopying,rcLock,rcExists)
PS F:\sratoolkit.3.1.0-win64\bin> .\prefetch SRR13336836 -fy

2024-04-19T10:20:34 prefetch.3.1.0: Current preference is set to retrieve SRA Normalized Format files with full base quality scores.
2024-04-19T10:20:35 prefetch.3.1.0: 1) Downloading 'SRR13336836'...
2024-04-19T10:20:35 prefetch.3.1.0: SRA Normalized Format file is being retrieved, if this is different from your preference, it may be due to current file availability.
2024-04-19T10:20:35 prefetch.3.1.0:  Downloading via HTTPS...
2024-04-19T12:38:15 prefetch.3.1.0:  HTTPS download succeed
2024-04-19T12:38:15 prefetch.3.1.0:   verifying 'SRR13336836'...
2024-04-19T12:38:38 prefetch.3.1.0:  'SRR13336836' is valid
2024-04-19T12:38:39 prefetch.3.1.0: 1) 'SRR13336836' was downloaded successfully
2024-04-19T12:38:39 prefetch.3.1.0: 'SRR13336836' has 0 dependencies
PS F:\sratoolkit.3.1.0-win64\bin> vdb-validate SRR13336836
vdb-validate : The term 'vdb-validate' is not recognized as the name of a cmdlet, function, script file, or operable
program. Check the spelling of the name, or if a path was included, verify that the path is correct and try again.
At line:1 char:1
+ vdb-validate SRR13336836
+ ~~~~~~~~~~~~
    + CategoryInfo          : ObjectNotFound: (vdb-validate:String) [], CommandNotFoundException
    + FullyQualifiedErrorId : CommandNotFoundException

Suggestion [3,General]: The command vdb-validate was not found, but does exist in the current location. Windows PowerShell does not load commands from the current location by default. If you trust this command, instead type: ".\vdb-validate". See "get-help about_Command_Precedence" for more details.
PS F:\sratoolkit.3.1.0-win64\bin> .\vdb-validate SRR13336836
2024-04-19T13:11:56 vdb-validate.3.1.0 info: Validating '/c/Users/urska/Desktop/PhD/SRA_Location of user-repository/sra/SRR13336836.sra'...
2024-04-19T13:11:56 vdb-validate.3.1.0 info: Database 'SRR13336836.sra' metadata: md5 ok
2024-04-19T13:11:56 vdb-validate.3.1.0 info: Table 'SEQUENCE' metadata: md5 ok
2024-04-19T13:11:57 vdb-validate.3.1.0 info: Column 'ALTREAD': checksums ok
2024-04-19T13:12:04 vdb-validate.3.1.0 info: Column 'QUALITY': checksums ok
2024-04-19T13:12:14 vdb-validate.3.1.0 info: Column 'READ': checksums ok
2024-04-19T13:12:15 vdb-validate.3.1.0 info: Column 'READ_LEN': checksums ok
2024-04-19T13:12:16 vdb-validate.3.1.0 info: Column 'READ_START': checksums ok
2024-04-19T13:12:17 vdb-validate.3.1.0 info: Database '/c/Users/urska/Desktop/PhD/SRA_Location of user-repository/sra/SRR13336836.sra' contains only unaligned reads
2024-04-19T13:12:17 vdb-validate.3.1.0 info: Database 'SRR13336836.sra' is consistent
PS F:\sratoolkit.3.1.0-win64\bin>

I have also tried to download sra file directly on external drive and have not received any error. At the moment, the transfer seems to be working so I will try downloading the other sequences as well and will report the outcome.

For now - thank you very much for all your help and patience :)

klymenko commented 5 months ago

Run prefetch -fy for all accessions where prefetch reported failed to verify.

uasic commented 5 months ago

I've managed to download quite few sequences without any errors, till yesterday when first few .sra files from PRJNA845014 were downloaded successfully, but after that I get the same error (output 1) . Using -fy saves files directly on my computer and does not work, if I try to save file directly on external drive (outputs 2 and 3).

PS F:\sratoolkit.3.1.0-win64\bin> .\prefetch --output-directory F:\phd-sekvence\wgs\PRJNA845014_sra -p -H 5 PRJNA845014

2024-04-25T19:36:58 prefetch.3.1.0 int: string unexpected while executing query within virtual file system module - multiple response SRR URLs for the same service 's3'
2024-04-25T19:36:58 prefetch.3.1.0 int: string unexpected while executing query within virtual file system module - multiple response SRR URLs for the same service 's3'
2024-04-25T19:36:58 prefetch.3.1.0 int: string unexpected while executing query within virtual file system module - multiple response SRR URLs for the same service 's3'
2024-04-25T19:36:58 prefetch.3.1.0 int: string unexpected while executing query within virtual file system module - multiple response SRR URLs for the same service 's3'
2024-04-25T19:36:58 prefetch.3.1.0 int: string unexpected while executing query within virtual file system module - multiple response SRR URLs for the same service 's3'
2024-04-25T19:36:58 prefetch.3.1.0 int: string unexpected while executing query within virtual file system module - multiple response SRR URLs for the same service 's3'
2024-04-25T19:36:58 prefetch.3.1.0 int: string unexpected while executing query within virtual file system module - multiple response SRR URLs for the same service 's3'
2024-04-25T19:36:58 prefetch.3.1.0 int: string unexpected while executing query within virtual file system module - multiple response SRR URLs for the same service 's3'
2024-04-25T19:36:58 prefetch.3.1.0 int: string unexpected while executing query within virtual file system module - multiple response SRR URLs for the same service 's3'
2024-04-25T19:36:58 prefetch.3.1.0 int: string unexpected while executing query within virtual file system module - multiple response SRR URLs for the same service 's3'
2024-04-25T19:36:58 prefetch.3.1.0 int: string unexpected while executing query within virtual file system module - multiple response SRR URLs for the same service 's3'
2024-04-25T19:36:58 prefetch.3.1.0 int: string unexpected while executing query within virtual file system module - multiple response SRR URLs for the same service 's3'
2024-04-25T19:36:58 prefetch.3.1.0 int: string unexpected while executing query within virtual file system module - multiple response SRR URLs for the same service 's3'
2024-04-25T19:36:58 prefetch.3.1.0 int: string unexpected while executing query within virtual file system module - multiple response SRR URLs for the same service 's3'
2024-04-25T19:36:58 prefetch.3.1.0 int: string unexpected while executing query within virtual file system module - multiple response SRR URLs for the same service 's3'
2024-04-25T19:36:58 prefetch.3.1.0 int: string unexpected while executing query within virtual file system module - multiple response SRR URLs for the same service 's3'
2024-04-25T19:36:58 prefetch.3.1.0 int: string unexpected while executing query within virtual file system module - multiple response SRR URLs for the same service 's3'
2024-04-25T19:36:58 prefetch.3.1.0 int: string unexpected while executing query within virtual file system module - multiple response SRR URLs for the same service 's3'
2024-04-25T19:36:58 prefetch.3.1.0 int: string unexpected while executing query within virtual file system module - multiple response SRR URLs for the same service 's3'
2024-04-25T19:36:58 prefetch.3.1.0 int: string unexpected while executing query within virtual file system module - multiple response SRR URLs for the same service 's3'
2024-04-25T19:36:58 prefetch.3.1.0 int: string unexpected while executing query within virtual file system module - multiple response SRR URLs for the same service 's3'
2024-04-25T19:36:58 prefetch.3.1.0 int: string unexpected while executing query within virtual file system module - multiple response SRR URLs for the same service 's3'
2024-04-25T19:36:58 prefetch.3.1.0 int: string unexpected while executing query within virtual file system module - multiple response SRR URLs for the same service 's3'
2024-04-25T19:36:58 prefetch.3.1.0 int: string unexpected while executing query within virtual file system module - multiple response SRR URLs for the same service 's3'
2024-04-25T19:36:58 prefetch.3.1.0 int: string unexpected while executing query within virtual file system module - multiple response SRR URLs for the same service 's3'
2024-04-25T19:36:58 prefetch.3.1.0 int: string unexpected while executing query within virtual file system module - multiple response SRR URLs for the same service 's3'
2024-04-25T19:36:58 prefetch.3.1.0 int: string unexpected while executing query within virtual file system module - multiple response SRR URLs for the same service 's3'
2024-04-25T19:36:58 prefetch.3.1.0 int: string unexpected while executing query within virtual file system module - multiple response SRR URLs for the same service 's3'
2024-04-25T19:36:58 prefetch.3.1.0 int: string unexpected while executing query within virtual file system module - multiple response SRR URLs for the same service 's3'
2024-04-25T19:36:58 prefetch.3.1.0 int: string unexpected while executing query within virtual file system module - multiple response SRR URLs for the same service 's3'
2024-04-25T19:36:58 prefetch.3.1.0 int: string unexpected while executing query within virtual file system module - multiple response SRR URLs for the same service 's3'
2024-04-25T19:36:58 prefetch.3.1.0 int: string unexpected while executing query within virtual file system module - multiple response SRR URLs for the same service 's3'
2024-04-25T19:36:58 prefetch.3.1.0 int: string unexpected while executing query within virtual file system module - multiple response SRR URLs for the same service 's3'
2024-04-25T19:36:58 prefetch.3.1.0 int: string unexpected while executing query within virtual file system module - multiple response SRR URLs for the same service 's3'
2024-04-25T19:36:58 prefetch.3.1.0 int: string unexpected while executing query within virtual file system module - multiple response SRR URLs for the same service 's3'
2024-04-25T19:36:58 prefetch.3.1.0 int: string unexpected while executing query within virtual file system module - multiple response SRR URLs for the same service 's3'
2024-04-25T19:36:58 prefetch.3.1.0 int: string unexpected while executing query within virtual file system module - multiple response SRR URLs for the same service 's3'
2024-04-25T19:36:58 prefetch.3.1.0 int: string unexpected while executing query within virtual file system module - multiple response SRR URLs for the same service 's3'
2024-04-25T19:36:58 prefetch.3.1.0 int: string unexpected while executing query within virtual file system module - multiple response SRR URLs for the same service 's3'
2024-04-25T19:36:58 prefetch.3.1.0 int: string unexpected while executing query within virtual file system module - multiple response SRR URLs for the same service 's3'
2024-04-25T19:36:58 prefetch.3.1.0 int: string unexpected while executing query within virtual file system module - multiple response SRR URLs for the same service 's3'
2024-04-25T19:36:58 prefetch.3.1.0 int: string unexpected while executing query within virtual file system module - multiple response SRR URLs for the same service 's3'
2024-04-25T19:36:58 prefetch.3.1.0 int: string unexpected while executing query within virtual file system module - multiple response SRR URLs for the same service 's3'
2024-04-25T19:36:58 prefetch.3.1.0 int: string unexpected while executing query within virtual file system module - multiple response SRR URLs for the same service 's3'
2024-04-25T19:36:58 prefetch.3.1.0 int: string unexpected while executing query within virtual file system module - multiple response SRR URLs for the same service 's3'
2024-04-25T19:36:58 prefetch.3.1.0 int: string unexpected while executing query within virtual file system module - multiple response SRR URLs for the same service 's3'
2024-04-25T19:36:58 prefetch.3.1.0 int: string unexpected while executing query within virtual file system module - multiple response SRR URLs for the same service 's3'
2024-04-25T19:36:58 prefetch.3.1.0 int: string unexpected while executing query within virtual file system module - multiple response SRR URLs for the same service 's3'
2024-04-25T19:36:58 prefetch.3.1.0 int: string unexpected while executing query within virtual file system module - multiple response SRR URLs for the same service 's3'
2024-04-25T19:36:58 prefetch.3.1.0 int: string unexpected while executing query within virtual file system module - multiple response SRR URLs for the same service 's3'
2024-04-25T19:36:58 prefetch.3.1.0 int: string unexpected while executing query within virtual file system module - multiple response SRR URLs for the same service 's3'
2024-04-25T19:36:58 prefetch.3.1.0 int: string unexpected while executing query within virtual file system module - multiple response SRR URLs for the same service 's3'
2024-04-25T19:36:58 prefetch.3.1.0 int: string unexpected while executing query within virtual file system module - multiple response SRR URLs for the same service 's3'
2024-04-25T19:36:58 prefetch.3.1.0 int: string unexpected while executing query within virtual file system module - multiple response SRR URLs for the same service 's3'
2024-04-25T19:36:58 prefetch.3.1.0 int: string unexpected while executing query within virtual file system module - multiple response SRR URLs for the same service 's3'
2024-04-25T19:36:58 prefetch.3.1.0 int: string unexpected while executing query within virtual file system module - multiple response SRR URLs for the same service 's3'
2024-04-25T19:36:58 prefetch.3.1.0 int: string unexpected while executing query within virtual file system module - multiple response SRR URLs for the same service 's3'
2024-04-25T19:36:58 prefetch.3.1.0 int: string unexpected while executing query within virtual file system module - multiple response SRR URLs for the same service 's3'
2024-04-25T19:36:58 prefetch.3.1.0 int: string unexpected while executing query within virtual file system module - multiple response SRR URLs for the same service 's3'
2024-04-25T19:36:58 prefetch.3.1.0 int: string unexpected while executing query within virtual file system module - multiple response SRR URLs for the same service 's3'
2024-04-25T19:36:58 prefetch.3.1.0 int: string unexpected while executing query within virtual file system module - multiple response SRR URLs for the same service 's3'
2024-04-25T19:36:58 prefetch.3.1.0 int: string unexpected while executing query within virtual file system module - multiple response SRR URLs for the same service 's3'
2024-04-25T19:36:58 prefetch.3.1.0 int: string unexpected while executing query within virtual file system module - multiple response SRR URLs for the same service 's3'
2024-04-25T19:36:58 prefetch.3.1.0 int: string unexpected while executing query within virtual file system module - multiple response SRR URLs for the same service 's3'
2024-04-25T19:36:58 prefetch.3.1.0 int: string unexpected while executing query within virtual file system module - multiple response SRR URLs for the same service 's3'
2024-04-25T19:36:58 prefetch.3.1.0 int: string unexpected while executing query within virtual file system module - multiple response SRR URLs for the same service 's3'
2024-04-25T19:36:58 prefetch.3.1.0 int: string unexpected while executing query within virtual file system module - multiple response SRR URLs for the same service 's3'
2024-04-25T19:36:58 prefetch.3.1.0 int: string unexpected while executing query within virtual file system module - multiple response SRR URLs for the same service 's3'
2024-04-25T19:36:58 prefetch.3.1.0 int: string unexpected while executing query within virtual file system module - multiple response SRR URLs for the same service 's3'
2024-04-25T19:36:58 prefetch.3.1.0 int: string unexpected while executing query within virtual file system module - multiple response SRR URLs for the same service 's3'
2024-04-25T19:36:58 prefetch.3.1.0 int: string unexpected while executing query within virtual file system module - multiple response SRR URLs for the same service 's3'
2024-04-25T19:36:58 prefetch.3.1.0 int: string unexpected while executing query within virtual file system module - multiple response SRR URLs for the same service 's3'
2024-04-25T19:36:58 prefetch.3.1.0 int: string unexpected while executing query within virtual file system module - multiple response SRR URLs for the same service 's3'
2024-04-25T19:36:58 prefetch.3.1.0 int: string unexpected while executing query within virtual file system module - multiple response SRR URLs for the same service 's3'
2024-04-25T19:36:58 prefetch.3.1.0 int: string unexpected while executing query within virtual file system module - multiple response SRR URLs for the same service 's3'
2024-04-25T19:36:58 prefetch.3.1.0 int: string unexpected while executing query within virtual file system module - multiple response SRR URLs for the same service 's3'
2024-04-25T19:36:58 prefetch.3.1.0 int: string unexpected while executing query within virtual file system module - multiple response SRR URLs for the same service 's3'
2024-04-25T19:36:58 prefetch.3.1.0 int: string unexpected while executing query within virtual file system module - multiple response SRR URLs for the same service 's3'
2024-04-25T19:36:58 prefetch.3.1.0 int: string unexpected while executing query within virtual file system module - multiple response SRR URLs for the same service 's3'
2024-04-25T19:36:58 prefetch.3.1.0 int: string unexpected while executing query within virtual file system module - multiple response SRR URLs for the same service 's3'
2024-04-25T19:36:58 prefetch.3.1.0 int: string unexpected while executing query within virtual file system module - multiple response SRR URLs for the same service 's3'
2024-04-25T19:36:58 prefetch.3.1.0 int: string unexpected while executing query within virtual file system module - multiple response SRR URLs for the same service 's3'
2024-04-25T19:36:58 prefetch.3.1.0 int: string unexpected while executing query within virtual file system module - multiple response SRR URLs for the same service 's3'
2024-04-25T19:36:58 prefetch.3.1.0 int: string unexpected while executing query within virtual file system module - multiple response SRR URLs for the same service 's3'
2024-04-25T19:36:58 prefetch.3.1.0 int: string unexpected while executing query within virtual file system module - multiple response SRR URLs for the same service 's3'
2024-04-25T19:36:58 prefetch.3.1.0 int: string unexpected while executing query within virtual file system module - multiple response SRR URLs for the same service 's3'
2024-04-25T19:36:58 prefetch.3.1.0 int: string unexpected while executing query within virtual file system module - multiple response SRR URLs for the same service 's3'
2024-04-25T19:36:58 prefetch.3.1.0 int: string unexpected while executing query within virtual file system module - multiple response SRR URLs for the same service 's3'
2024-04-25T19:36:58 prefetch.3.1.0 int: string unexpected while executing query within virtual file system module - multiple response SRR URLs for the same service 's3'
2024-04-25T19:36:58 prefetch.3.1.0 int: string unexpected while executing query within virtual file system module - multiple response SRR URLs for the same service 's3'
2024-04-25T19:36:58 prefetch.3.1.0 int: string unexpected while executing query within virtual file system module - multiple response SRR URLs for the same service 's3'
2024-04-25T19:36:58 prefetch.3.1.0 int: string unexpected while executing query within virtual file system module - multiple response SRR URLs for the same service 's3'
2024-04-25T19:36:58 prefetch.3.1.0 int: string unexpected while executing query within virtual file system module - multiple response SRR URLs for the same service 's3'
2024-04-25T19:36:58 prefetch.3.1.0 int: string unexpected while executing query within virtual file system module - multiple response SRR URLs for the same service 's3'
2024-04-25T19:36:58 prefetch.3.1.0 int: string unexpected while executing query within virtual file system module - multiple response SRR URLs for the same service 's3'
2024-04-25T19:36:58 prefetch.3.1.0 int: string unexpected while executing query within virtual file system module - multiple response SRR URLs for the same service 's3'
2024-04-25T19:36:58 prefetch.3.1.0 int: string unexpected while executing query within virtual file system module - multiple response SRR URLs for the same service 's3'
2024-04-25T19:36:58 prefetch.3.1.0 int: string unexpected while executing query within virtual file system module - multiple response SRR URLs for the same service 's3'
2024-04-25T19:36:58 prefetch.3.1.0 int: string unexpected while executing query within virtual file system module - multiple response SRR URLs for the same service 's3'
2024-04-25T19:36:58 prefetch.3.1.0 int: string unexpected while executing query within virtual file system module - multiple response SRR URLs for the same service 's3'
2024-04-25T19:36:58 prefetch.3.1.0 int: string unexpected while executing query within virtual file system module - multiple response SRR URLs for the same service 's3'
2024-04-25T19:36:58 prefetch.3.1.0 int: string unexpected while executing query within virtual file system module - multiple response SRR URLs for the same service 's3'
2024-04-25T19:36:58 prefetch.3.1.0 int: string unexpected while executing query within virtual file system module - multiple response SRR URLs for the same service 's3'
2024-04-25T19:36:58 prefetch.3.1.0 int: string unexpected while executing query within virtual file system module - multiple response SRR URLs for the same service 's3'
2024-04-25T19:36:58 prefetch.3.1.0 int: string unexpected while executing query within virtual file system module - multiple response SRR URLs for the same service 's3'
2024-04-25T19:36:58 prefetch.3.1.0 int: string unexpected while executing query within virtual file system module - multiple response SRR URLs for the same service 's3'
2024-04-25T19:36:58 prefetch.3.1.0 int: string unexpected while executing query within virtual file system module - multiple response SRR URLs for the same service 's3'
2024-04-25T19:36:58 prefetch.3.1.0 int: string unexpected while executing query within virtual file system module - multiple response SRR URLs for the same service 's3'
2024-04-25T19:36:58 prefetch.3.1.0 int: string unexpected while executing query within virtual file system module - multiple response SRR URLs for the same service 's3'
2024-04-25T19:36:58 prefetch.3.1.0 int: string unexpected while executing query within virtual file system module - multiple response SRR URLs for the same service 's3'
2024-04-25T19:36:58 prefetch.3.1.0 int: string unexpected while executing query within virtual file system module - multiple response SRR URLs for the same service 's3'
2024-04-25T19:36:58 prefetch.3.1.0 int: string unexpected while executing query within virtual file system module - multiple response SRR URLs for the same service 's3'
2024-04-25T19:36:58 prefetch.3.1.0 int: string unexpected while executing query within virtual file system module - multiple response SRR URLs for the same service 's3'
2024-04-25T19:36:58 prefetch.3.1.0 int: string unexpected while executing query within virtual file system module - multiple response SRR URLs for the same service 's3'
2024-04-25T19:36:58 prefetch.3.1.0 int: string unexpected while executing query within virtual file system module - multiple response SRR URLs for the same service 's3'
2024-04-25T19:36:58 prefetch.3.1.0 int: string unexpected while executing query within virtual file system module - multiple response SRR URLs for the same service 's3'
2024-04-25T19:36:58 prefetch.3.1.0 int: string unexpected while executing query within virtual file system module - multiple response SRR URLs for the same service 's3'
2024-04-25T19:36:58 prefetch.3.1.0 int: string unexpected while executing query within virtual file system module - multiple response SRR URLs for the same service 's3'
2024-04-25T19:36:58 prefetch.3.1.0 int: string unexpected while executing query within virtual file system module - multiple response SRR URLs for the same service 's3'
2024-04-25T19:36:58 prefetch.3.1.0 int: string unexpected while executing query within virtual file system module - multiple response SRR URLs for the same service 's3'
2024-04-25T19:36:58 prefetch.3.1.0 int: string unexpected while executing query within virtual file system module - multiple response SRR URLs for the same service 's3'
2024-04-25T19:36:58 prefetch.3.1.0 int: string unexpected while executing query within virtual file system module - multiple response SRR URLs for the same service 's3'
2024-04-25T19:36:58 prefetch.3.1.0 int: string unexpected while executing query within virtual file system module - multiple response SRR URLs for the same service 's3'
2024-04-25T19:36:58 prefetch.3.1.0 int: string unexpected while executing query within virtual file system module - multiple response SRR URLs for the same service 's3'
2024-04-25T19:36:58 prefetch.3.1.0 int: string unexpected while executing query within virtual file system module - multiple response SRR URLs for the same service 's3'
2024-04-25T19:36:58 prefetch.3.1.0 int: string unexpected while executing query within virtual file system module - multiple response SRR URLs for the same service 's3'
2024-04-25T19:36:58 prefetch.3.1.0 int: string unexpected while executing query within virtual file system module - multiple response SRR URLs for the same service 's3'
2024-04-25T19:36:58 prefetch.3.1.0 int: string unexpected while executing query within virtual file system module - multiple response SRR URLs for the same service 's3'
2024-04-25T19:36:58 prefetch.3.1.0 int: string unexpected while executing query within virtual file system module - multiple response SRR URLs for the same service 's3'
2024-04-25T19:36:58 prefetch.3.1.0 int: string unexpected while executing query within virtual file system module - multiple response SRR URLs for the same service 's3'
2024-04-25T19:36:58 prefetch.3.1.0 int: string unexpected while executing query within virtual file system module - multiple response SRR URLs for the same service 's3'
2024-04-25T19:36:58 prefetch.3.1.0 int: string unexpected while executing query within virtual file system module - multiple response SRR URLs for the same service 's3'
2024-04-25T19:36:58 prefetch.3.1.0 int: string unexpected while executing query within virtual file system module - multiple response SRR URLs for the same service 's3'
2024-04-25T19:36:58 prefetch.3.1.0 int: string unexpected while executing query within virtual file system module - multiple response SRR URLs for the same service 's3'
2024-04-25T19:36:58 prefetch.3.1.0 int: string unexpected while executing query within virtual file system module - multiple response SRR URLs for the same service 's3'
2024-04-25T19:36:58 prefetch.3.1.0 int: string unexpected while executing query within virtual file system module - multiple response SRR URLs for the same service 's3'
2024-04-25T19:36:58 prefetch.3.1.0 int: string unexpected while executing query within virtual file system module - multiple response SRR URLs for the same service 's3'
2024-04-25T19:36:58 prefetch.3.1.0 int: string unexpected while executing query within virtual file system module - multiple response SRR URLs for the same service 's3'
2024-04-25T19:36:58 prefetch.3.1.0 int: string unexpected while executing query within virtual file system module - multiple response SRR URLs for the same service 's3'
2024-04-25T19:36:58 prefetch.3.1.0 int: string unexpected while executing query within virtual file system module - multiple response SRR URLs for the same service 's3'
2024-04-25T19:36:58 prefetch.3.1.0 int: string unexpected while executing query within virtual file system module - multiple response SRR URLs for the same service 's3'
2024-04-25T19:36:58 prefetch.3.1.0 int: string unexpected while executing query within virtual file system module - multiple response SRR URLs for the same service 's3'
2024-04-25T19:36:58 prefetch.3.1.0 int: string unexpected while executing query within virtual file system module - multiple response SRR URLs for the same service 's3'
2024-04-25T19:36:58 prefetch.3.1.0 int: string unexpected while executing query within virtual file system module - multiple response SRR URLs for the same service 's3'
2024-04-25T19:36:58 prefetch.3.1.0 int: string unexpected while executing query within virtual file system module - multiple response SRR URLs for the same service 's3'
2024-04-25T19:36:58 prefetch.3.1.0 int: string unexpected while executing query within virtual file system module - multiple response SRR URLs for the same service 's3'
2024-04-25T19:36:58 prefetch.3.1.0 int: string unexpected while executing query within virtual file system module - multiple response SRR URLs for the same service 's3'
2024-04-25T19:36:58 prefetch.3.1.0 int: string unexpected while executing query within virtual file system module - multiple response SRR URLs for the same service 's3'
2024-04-25T19:36:58 prefetch.3.1.0 int: string unexpected while executing query within virtual file system module - multiple response SRR URLs for the same service 's3'
2024-04-25T19:36:58 prefetch.3.1.0 int: string unexpected while executing query within virtual file system module - multiple response SRR URLs for the same service 's3'
2024-04-25T19:36:58 prefetch.3.1.0 int: string unexpected while executing query within virtual file system module - multiple response SRR URLs for the same service 's3'
2024-04-25T19:36:58 prefetch.3.1.0 int: string unexpected while executing query within virtual file system module - multiple response SRR URLs for the same service 's3'
2024-04-25T19:36:58 prefetch.3.1.0 int: string unexpected while executing query within virtual file system module - multiple response SRR URLs for the same service 's3'
2024-04-25T19:36:58 prefetch.3.1.0 int: string unexpected while executing query within virtual file system module - multiple response SRR URLs for the same service 's3'
2024-04-25T19:36:58 prefetch.3.1.0 int: string unexpected while executing query within virtual file system module - multiple response SRR URLs for the same service 's3'
2024-04-25T19:36:58 prefetch.3.1.0 int: string unexpected while executing query within virtual file system module - multiple response SRR URLs for the same service 's3'
2024-04-25T19:36:58 prefetch.3.1.0 int: string unexpected while executing query within virtual file system module - multiple response SRR URLs for the same service 's3'
2024-04-25T19:36:58 prefetch.3.1.0 int: string unexpected while executing query within virtual file system module - multiple response SRR URLs for the same service 's3'
2024-04-25T19:36:58 prefetch.3.1.0 int: string unexpected while executing query within virtual file system module - multiple response SRR URLs for the same service 's3'
2024-04-25T19:36:58 prefetch.3.1.0 int: string unexpected while executing query within virtual file system module - multiple response SRR URLs for the same service 's3'
2024-04-25T19:36:58 prefetch.3.1.0 int: string unexpected while executing query within virtual file system module - multiple response SRR URLs for the same service 's3'
2024-04-25T19:36:58 prefetch.3.1.0 int: string unexpected while executing query within virtual file system module - multiple response SRR URLs for the same service 's3'
2024-04-25T19:36:58 prefetch.3.1.0 int: string unexpected while executing query within virtual file system module - multiple response SRR URLs for the same service 's3'
2024-04-25T19:36:58 prefetch.3.1.0 int: string unexpected while executing query within virtual file system module - multiple response SRR URLs for the same service 's3'
2024-04-25T19:36:58 prefetch.3.1.0 int: string unexpected while executing query within virtual file system module - multiple response SRR URLs for the same service 's3'
2024-04-25T19:36:58 prefetch.3.1.0 int: string unexpected while executing query within virtual file system module - multiple response SRR URLs for the same service 's3'
2024-04-25T19:36:58 prefetch.3.1.0 int: string unexpected while executing query within virtual file system module - multiple response SRR URLs for the same service 's3'
2024-04-25T19:36:58 prefetch.3.1.0 int: string unexpected while executing query within virtual file system module - multiple response SRR URLs for the same service 's3'
2024-04-25T19:36:58 prefetch.3.1.0 int: string unexpected while executing query within virtual file system module - multiple response SRR URLs for the same service 's3'
2024-04-25T19:36:58 prefetch.3.1.0 int: string unexpected while executing query within virtual file system module - multiple response SRR URLs for the same service 's3'
2024-04-25T19:36:58 prefetch.3.1.0 int: string unexpected while executing query within virtual file system module - multiple response SRR URLs for the same service 's3'
2024-04-25T19:36:58 prefetch.3.1.0 int: string unexpected while executing query within virtual file system module - multiple response SRR URLs for the same service 's3'
2024-04-25T19:36:58 prefetch.3.1.0 int: string unexpected while executing query within virtual file system module - multiple response SRR URLs for the same service 's3'
2024-04-25T19:36:58 prefetch.3.1.0 int: string unexpected while executing query within virtual file system module - multiple response SRR URLs for the same service 's3'
2024-04-25T19:36:58 prefetch.3.1.0 int: string unexpected while executing query within virtual file system module - multiple response SRR URLs for the same service 's3'
2024-04-25T19:36:58 prefetch.3.1.0 int: string unexpected while executing query within virtual file system module - multiple response SRR URLs for the same service 's3'
2024-04-25T19:36:58 prefetch.3.1.0 int: string unexpected while executing query within virtual file system module - multiple response SRR URLs for the same service 's3'
2024-04-25T19:36:58 prefetch.3.1.0 int: string unexpected while executing query within virtual file system module - multiple response SRR URLs for the same service 's3'
2024-04-25T19:36:58 prefetch.3.1.0 int: string unexpected while executing query within virtual file system module - multiple response SRR URLs for the same service 's3'
2024-04-25T19:36:58 prefetch.3.1.0 int: string unexpected while executing query within virtual file system module - multiple response SRR URLs for the same service 's3'
2024-04-25T19:36:58 prefetch.3.1.0 int: string unexpected while executing query within virtual file system module - multiple response SRR URLs for the same service 's3'
2024-04-25T19:36:58 prefetch.3.1.0 int: string unexpected while executing query within virtual file system module - multiple response SRR URLs for the same service 's3'
2024-04-25T19:36:58 prefetch.3.1.0 int: string unexpected while executing query within virtual file system module - multiple response SRR URLs for the same service 's3'
2024-04-25T19:36:58 prefetch.3.1.0 int: string unexpected while executing query within virtual file system module - multiple response SRR URLs for the same service 's3'
2024-04-25T19:36:58 prefetch.3.1.0 int: string unexpected while executing query within virtual file system module - multiple response SRR URLs for the same service 's3'
2024-04-25T19:36:58 prefetch.3.1.0 int: string unexpected while executing query within virtual file system module - multiple response SRR URLs for the same service 's3'
2024-04-25T19:36:58 prefetch.3.1.0 int: string unexpected while executing query within virtual file system module - multiple response SRR URLs for the same service 's3'
2024-04-25T19:36:58 prefetch.3.1.0 int: string unexpected while executing query within virtual file system module - multiple response SRR URLs for the same service 's3'
2024-04-25T19:36:58 prefetch.3.1.0 int: string unexpected while executing query within virtual file system module - multiple response SRR URLs for the same service 's3'
2024-04-25T19:36:58 prefetch.3.1.0 int: string unexpected while executing query within virtual file system module - multiple response SRR URLs for the same service 's3'
2024-04-25T19:36:58 prefetch.3.1.0 int: string unexpected while executing query within virtual file system module - multiple response SRR URLs for the same service 's3'
2024-04-25T19:36:58 prefetch.3.1.0 int: string unexpected while executing query within virtual file system module - multiple response SRR URLs for the same service 's3'
2024-04-25T19:36:58 prefetch.3.1.0 int: string unexpected while executing query within virtual file system module - multiple response SRR URLs for the same service 's3'
2024-04-25T19:36:58 prefetch.3.1.0 int: string unexpected while executing query within virtual file system module - multiple response SRR URLs for the same service 's3'
2024-04-25T19:36:58 prefetch.3.1.0 int: string unexpected while executing query within virtual file system module - multiple response SRR URLs for the same service 's3'
2024-04-25T19:36:58 prefetch.3.1.0 int: string unexpected while executing query within virtual file system module - multiple response SRR URLs for the same service 's3'
2024-04-25T19:36:58 prefetch.3.1.0 int: string unexpected while executing query within virtual file system module - multiple response SRR URLs for the same service 's3'
2024-04-25T19:36:58 prefetch.3.1.0 int: string unexpected while executing query within virtual file system module - multiple response SRR URLs for the same service 's3'
2024-04-25T19:36:58 prefetch.3.1.0 int: string unexpected while executing query within virtual file system module - multiple response SRR URLs for the same service 's3'
2024-04-25T19:36:58 prefetch.3.1.0 int: string unexpected while executing query within virtual file system module - multiple response SRR URLs for the same service 's3'
2024-04-25T19:36:58 prefetch.3.1.0 int: string unexpected while executing query within virtual file system module - multiple response SRR URLs for the same service 's3'
2024-04-25T19:36:58 prefetch.3.1.0 int: string unexpected while executing query within virtual file system module - multiple response SRR URLs for the same service 's3'
2024-04-25T19:36:58 prefetch.3.1.0 int: string unexpected while executing query within virtual file system module - multiple response SRR URLs for the same service 's3'
2024-04-25T19:36:58 prefetch.3.1.0 int: string unexpected while executing query within virtual file system module - multiple response SRR URLs for the same service 's3'
2024-04-25T19:36:58 prefetch.3.1.0 int: string unexpected while executing query within virtual file system module - multiple response SRR URLs for the same service 's3'
2024-04-25T19:36:58 prefetch.3.1.0 int: string unexpected while executing query within virtual file system module - multiple response SRR URLs for the same service 's3'
2024-04-25T19:36:58 prefetch.3.1.0 int: string unexpected while executing query within virtual file system module - multiple response SRR URLs for the same service 's3'
2024-04-25T19:36:58 prefetch.3.1.0 int: string unexpected while executing query within virtual file system module - multiple response SRR URLs for the same service 's3'
2024-04-25T19:36:58 prefetch.3.1.0 int: string unexpected while executing query within virtual file system module - multiple response SRR URLs for the same service 's3'
2024-04-25T19:36:58 prefetch.3.1.0 int: string unexpected while executing query within virtual file system module - multiple response SRR URLs for the same service 's3'
2024-04-25T19:36:58 prefetch.3.1.0 int: string unexpected while executing query within virtual file system module - multiple response SRR URLs for the same service 's3'
2024-04-25T19:36:58 prefetch.3.1.0 int: string unexpected while executing query within virtual file system module - multiple response SRR URLs for the same service 's3'
2024-04-25T19:36:58 prefetch.3.1.0 int: string unexpected while executing query within virtual file system module - multiple response SRR URLs for the same service 's3'
2024-04-25T19:36:58 prefetch.3.1.0 int: string unexpected while executing query within virtual file system module - multiple response SRR URLs for the same service 's3'
2024-04-25T19:36:58 prefetch.3.1.0 int: string unexpected while executing query within virtual file system module - multiple response SRR URLs for the same service 's3'
2024-04-25T19:36:58 prefetch.3.1.0 int: string unexpected while executing query within virtual file system module - multiple response SRR URLs for the same service 's3'
2024-04-25T19:36:58 prefetch.3.1.0 int: string unexpected while executing query within virtual file system module - multiple response SRR URLs for the same service 's3'
2024-04-25T19:36:58 prefetch.3.1.0 int: string unexpected while executing query within virtual file system module - multiple response SRR URLs for the same service 's3'
2024-04-25T19:36:58 prefetch.3.1.0 int: string unexpected while executing query within virtual file system module - multiple response SRR URLs for the same service 's3'
2024-04-25T19:36:58 prefetch.3.1.0 int: string unexpected while executing query within virtual file system module - multiple response SRR URLs for the same service 's3'
2024-04-25T19:36:58 prefetch.3.1.0 int: string unexpected while executing query within virtual file system module - multiple response SRR URLs for the same service 's3'
2024-04-25T19:36:58 prefetch.3.1.0 int: string unexpected while executing query within virtual file system module - multiple response SRR URLs for the same service 's3'
2024-04-25T19:36:58 prefetch.3.1.0 int: string unexpected while executing query within virtual file system module - multiple response SRR URLs for the same service 's3'
2024-04-25T19:36:58 prefetch.3.1.0 int: string unexpected while executing query within virtual file system module - multiple response SRR URLs for the same service 's3'
2024-04-25T19:36:58 prefetch.3.1.0 int: string unexpected while executing query within virtual file system module - multiple response SRR URLs for the same service 's3'
2024-04-25T19:36:58 prefetch.3.1.0 int: string unexpected while executing query within virtual file system module - multiple response SRR URLs for the same service 's3'
2024-04-25T19:36:58 prefetch.3.1.0 int: string unexpected while executing query within virtual file system module - multiple response SRR URLs for the same service 's3'
2024-04-25T19:36:58 prefetch.3.1.0 int: string unexpected while executing query within virtual file system module - multiple response SRR URLs for the same service 's3'
2024-04-25T19:36:58 prefetch.3.1.0 int: string unexpected while executing query within virtual file system module - multiple response SRR URLs for the same service 's3'
2024-04-25T19:36:58 prefetch.3.1.0 int: string unexpected while executing query within virtual file system module - multiple response SRR URLs for the same service 's3'
2024-04-25T19:36:58 prefetch.3.1.0 int: string unexpected while executing query within virtual file system module - multiple response SRR URLs for the same service 's3'
2024-04-25T19:36:58 prefetch.3.1.0 int: string unexpected while executing query within virtual file system module - multiple response SRR URLs for the same service 's3'
2024-04-25T19:36:58 prefetch.3.1.0 int: string unexpected while executing query within virtual file system module - multiple response SRR URLs for the same service 's3'
2024-04-25T19:36:58 prefetch.3.1.0 int: string unexpected while executing query within virtual file system module - multiple response SRR URLs for the same service 's3'
2024-04-25T19:36:58 prefetch.3.1.0 int: string unexpected while executing query within virtual file system module - multiple response SRR URLs for the same service 's3'
2024-04-25T19:36:58 prefetch.3.1.0 int: string unexpected while executing query within virtual file system module - multiple response SRR URLs for the same service 's3'
2024-04-25T19:36:58 prefetch.3.1.0 int: string unexpected while executing query within virtual file system module - multiple response SRR URLs for the same service 's3'
2024-04-25T19:36:58 prefetch.3.1.0 int: string unexpected while executing query within virtual file system module - multiple response SRR URLs for the same service 's3'
2024-04-25T19:36:58 prefetch.3.1.0 int: string unexpected while executing query within virtual file system module - multiple response SRR URLs for the same service 's3'
2024-04-25T19:36:58 prefetch.3.1.0 int: string unexpected while executing query within virtual file system module - multiple response SRR URLs for the same service 's3'
2024-04-25T19:36:58 prefetch.3.1.0 int: string unexpected while executing query within virtual file system module - multiple response SRR URLs for the same service 's3'
2024-04-25T19:36:58 prefetch.3.1.0 int: string unexpected while executing query within virtual file system module - multiple response SRR URLs for the same service 's3'
2024-04-25T19:36:58 prefetch.3.1.0 int: string unexpected while executing query within virtual file system module - multiple response SRR URLs for the same service 's3'
2024-04-25T19:36:58 prefetch.3.1.0 int: string unexpected while executing query within virtual file system module - multiple response SRR URLs for the same service 's3'
2024-04-25T19:36:58 prefetch.3.1.0 int: string unexpected while executing query within virtual file system module - multiple response SRR URLs for the same service 's3'
2024-04-25T19:36:58 prefetch.3.1.0 int: string unexpected while executing query within virtual file system module - multiple response SRR URLs for the same service 's3'
2024-04-25T19:36:58 prefetch.3.1.0 int: string unexpected while executing query within virtual file system module - multiple response SRR URLs for the same service 's3'
2024-04-25T19:36:59 prefetch.3.1.0: Current preference is set to retrieve SRA Normalized Format files with full base quality scores.
2024-04-25T19:37:00 prefetch.3.1.0: 1) Downloading 'SRR19537273'...
2024-04-25T19:37:00 prefetch.3.1.0: SRA Normalized Format file is being retrieved, if this is different from your preference, it may be due to current file availability.
2024-04-25T19:37:00 prefetch.3.1.0:  Downloading via HTTPS...
|-------------------------------------------------- 100%
2024-04-25T20:47:34 prefetch.3.1.0:  HTTPS download succeed
2024-04-25T20:47:34 prefetch.3.1.0:   verifying 'SRR19537273'...
2024-04-25T20:48:05 prefetch.3.1.0:  'SRR19537273' is valid
2024-04-25T20:48:05 prefetch.3.1.0: 1) 'SRR19537273' was downloaded successfully
2024-04-25T20:48:05 prefetch.3.1.0: 1) Downloading 'SRR19537274'...
2024-04-25T20:48:05 prefetch.3.1.0: SRA Normalized Format file is being retrieved, if this is different from your preference, it may be due to current file availability.
2024-04-25T20:48:05 prefetch.3.1.0:  Downloading via HTTPS...
|-------------------------------------------------- 100%
2024-04-25T21:59:45 prefetch.3.1.0:  HTTPS download succeed
2024-04-25T21:59:45 prefetch.3.1.0:   verifying 'SRR19537274'...
2024-04-25T22:00:09 prefetch.3.1.0:  'SRR19537274' is valid
2024-04-25T22:00:09 prefetch.3.1.0: 1) 'SRR19537274' was downloaded successfully
2024-04-25T22:00:09 prefetch.3.1.0: 1) Downloading 'SRR19537275'...
2024-04-25T22:00:09 prefetch.3.1.0: SRA Normalized Format file is being retrieved, if this is different from your preference, it may be due to current file availability.
2024-04-25T22:00:09 prefetch.3.1.0:  Downloading via HTTPS...
|-------------------------------------------------- 100%
2024-04-25T23:03:31 prefetch.3.1.0:  HTTPS download succeed
2024-04-25T23:03:31 prefetch.3.1.0:   verifying 'SRR19537275'...
2024-04-25T23:04:01 prefetch.3.1.0:  'SRR19537275' is valid
2024-04-25T23:04:01 prefetch.3.1.0: 1) 'SRR19537275' was downloaded successfully
2024-04-25T23:04:01 prefetch.3.1.0: 1) Downloading 'SRR19537276'...
2024-04-25T23:04:02 prefetch.3.1.0: SRA Normalized Format file is being retrieved, if this is different from your preference, it may be due to current file availability.
2024-04-25T23:04:02 prefetch.3.1.0:  Downloading via HTTPS...
|-------------------------------------------------- 100%
2024-04-26T00:35:36 prefetch.3.1.0:  HTTPS download succeed
2024-04-26T00:35:36 prefetch.3.1.0:   verifying 'SRR19537276'...
2024-04-26T00:36:05 prefetch.3.1.0:  'SRR19537276' is valid
2024-04-26T00:36:05 prefetch.3.1.0: 1) 'SRR19537276' was downloaded successfully
2024-04-26T00:36:05 prefetch.3.1.0: 1) Downloading 'SRR19537277'...
2024-04-26T00:36:05 prefetch.3.1.0: SRA Normalized Format file is being retrieved, if this is different from your preference, it may be due to current file availability.
2024-04-26T00:36:05 prefetch.3.1.0:  Downloading via HTTPS...
|-------------------------------------------------- 100%
2024-04-26T01:21:48 prefetch.3.1.0:  HTTPS download succeed
2024-04-26T01:21:48 prefetch.3.1.0:   verifying 'SRR19537277'...
2024-04-26T01:22:08 prefetch.3.1.0:  'SRR19537277' is valid
2024-04-26T01:22:08 prefetch.3.1.0: 1) 'SRR19537277' was downloaded successfully
2024-04-26T01:22:08 prefetch.3.1.0: 1) Downloading 'SRR19537278'...
2024-04-26T01:22:08 prefetch.3.1.0: SRA Normalized Format file is being retrieved, if this is different from your preference, it may be due to current file availability.
2024-04-26T01:22:08 prefetch.3.1.0:  Downloading via HTTPS...
|-------------------------------------------------- 100%
2024-04-26T02:33:34 prefetch.3.1.0:  HTTPS download succeed
2024-04-26T02:33:34 prefetch.3.1.0:   verifying 'SRR19537278'...
2024-04-26T02:33:59 prefetch.3.1.0:  'SRR19537278' is valid
2024-04-26T02:33:59 prefetch.3.1.0: 1) 'SRR19537278' was downloaded successfully
2024-04-26T02:33:59 prefetch.3.1.0: 1) Downloading 'SRR19537279'...
2024-04-26T02:33:59 prefetch.3.1.0: SRA Normalized Format file is being retrieved, if this is different from your preference, it may be due to current file availability.
2024-04-26T02:33:59 prefetch.3.1.0:  Downloading via HTTPS...
|-------------------------------------------------- 100%
2024-04-26T03:39:02 prefetch.3.1.0:  HTTPS download succeed
2024-04-26T03:39:02 prefetch.3.1.0:   verifying 'SRR19537279'...
2024-04-26T03:39:26 prefetch.3.1.0:  'SRR19537279' is valid
2024-04-26T03:39:26 prefetch.3.1.0: 1) 'SRR19537279' was downloaded successfully
2024-04-26T03:39:26 prefetch.3.1.0: 1) Downloading 'SRR19537280'...
2024-04-26T03:39:26 prefetch.3.1.0: SRA Normalized Format file is being retrieved, if this is different from your preference, it may be due to current file availability.
2024-04-26T03:39:26 prefetch.3.1.0:  Downloading via HTTPS...
|-------------------------------------------------- 100%
2024-04-26T04:45:28 prefetch.3.1.0:  HTTPS download succeed
2024-04-26T04:45:28 prefetch.3.1.0:   verifying 'SRR19537280'...
2024-04-26T04:46:00 prefetch.3.1.0:  'SRR19537280' is valid
2024-04-26T04:46:00 prefetch.3.1.0: 1) 'SRR19537280' was downloaded successfully
2024-04-26T04:46:00 prefetch.3.1.0: 1) Downloading 'SRR19537281'...
2024-04-26T04:46:00 prefetch.3.1.0: SRA Normalized Format file is being retrieved, if this is different from your preference, it may be due to current file availability.
2024-04-26T04:46:00 prefetch.3.1.0:  Downloading via HTTPS...
|-------------------------------------------------- 100%
2024-04-26T05:43:53 prefetch.3.1.0:  HTTPS download succeed
2024-04-26T05:43:53 prefetch.3.1.0:   verifying 'SRR19537281'...
2024-04-26T05:44:09 prefetch.3.1.0:  'SRR19537281' is valid
2024-04-26T05:44:09 prefetch.3.1.0: 1) 'SRR19537281' was downloaded successfully
2024-04-26T05:44:09 prefetch.3.1.0: 1) Downloading 'SRR19537282'...
2024-04-26T05:44:09 prefetch.3.1.0: SRA Normalized Format file is being retrieved, if this is different from your preference, it may be due to current file availability.
2024-04-26T05:44:09 prefetch.3.1.0:  Downloading via HTTPS...
|-------------------------------------------------- 100%
2024-04-26T07:27:20 prefetch.3.1.0:  HTTPS download succeed
2024-04-26T07:27:20 prefetch.3.1.0:   verifying 'SRR19537282'...
2024-04-26T07:27:58 prefetch.3.1.0:  'SRR19537282' is valid
2024-04-26T07:27:58 prefetch.3.1.0: 1) 'SRR19537282' was downloaded successfully
2024-04-26T07:27:58 prefetch.3.1.0: 1) Downloading 'SRR19537283'...
2024-04-26T07:27:58 prefetch.3.1.0: SRA Normalized Format file is being retrieved, if this is different from your preference, it may be due to current file availability.
2024-04-26T07:27:58 prefetch.3.1.0:  Downloading via HTTPS...
|-------------------------------------------------- 100%
2024-04-26T09:39:48 prefetch.3.1.0:  HTTPS download succeed
2024-04-26T09:39:48 prefetch.3.1.0:   verifying 'SRR19537283'...
2024-04-26T10:25:34 prefetch.3.1.0 int: no error - failed to verify
2024-04-26T10:25:36 prefetch.3.1.0: 1) failed to download 'SRR19537283': RC(rcFS,rcFile,rcReading,rcFile,rcCorrupt)

PS F:\sratoolkit.3.1.0-win64\bin> .\prefetch --output-directory F:\phd-sekvence\wgs\PRJNA845014_sra -p -H 5 SRR19537283 -fy

2024-04-27T05:32:01 prefetch.3.1.0: Current preference is set to retrieve SRA Normalized Format files with full base quality scores.
2024-04-27T05:32:01 prefetch.3.1.0: 1) Downloading 'SRR19537283'...
2024-04-27T05:32:09 prefetch.3.1.0: SRA Normalized Format file is being retrieved, if this is different from your preference, it may be due to current file availability.
2024-04-27T05:32:09 prefetch.3.1.0:  Downloading via HTTPS...
|-------------------------------------------------- 100%
2024-04-27T07:41:41 prefetch.3.1.0:  HTTPS download succeed
2024-04-27T07:41:41 prefetch.3.1.0:   verifying 'SRR19537283'...
2024-04-27T08:10:16 prefetch.3.1.0 int: no error - failed to verify
2024-04-27T08:10:16 prefetch.3.1.0: 1) failed to download 'SRR19537283': RC(rcFS,rcFile,rcReading,rcFile,rcCorrupt)

PS F:\sratoolkit.3.1.0-win64\bin> .\prefetch SRR19537283 -fy

2024-04-27T08:57:09 prefetch.3.1.0: Current preference is set to retrieve SRA Normalized Format files with full base quality scores.
2024-04-27T08:57:10 prefetch.3.1.0: 1) Downloading 'SRR19537283'...
2024-04-27T08:57:10 prefetch.3.1.0: SRA Normalized Format file is being retrieved, if this is different from your preference, it may be due to current file availability.
2024-04-27T08:57:10 prefetch.3.1.0:  Downloading via HTTPS...
2024-04-27T09:07:24 prefetch.3.1.0:  HTTPS download succeed
2024-04-27T09:07:24 prefetch.3.1.0:   verifying 'SRR19537283'...
2024-04-27T09:07:47 prefetch.3.1.0:  'SRR19537283' is valid
2024-04-27T09:07:47 prefetch.3.1.0: 1) 'SRR19537283' was downloaded successfully

klymenko commented 4 months ago

There seems to be an issue on Windows. Sometimes prefetch-ed file is invalid - md5 sum does not match. We added logging information to track this issue and will do improvements to fix it in the future.

uasic commented 3 months ago

Thank you! :)

ncbi / sra-tools

prefetch - failed to verify error #920

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