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Unresolved dependencies with prefetch followed by fatal segmentation fault error #940

Open guester opened 5 months ago

guester commented 5 months ago

When running prefetch on a particular dataset I'm seeing a message about 'unresolved dependencies':

image

And then when I try fasterq-dump on the prefetched dataset I get the following error:

image

Any ideas what might be going on here?

durbrow commented 5 months ago

Unresolved dependencies

This is unrelated and not an error. The message means that ERR1079175 uses 25 external reference sequences and prefetch is going to download them.

The segfault in fasterq-dump is something we will look into. It looks like it may have occurred while fasterq-dump was cleaning up its temporary files, so it may have completed.