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ncbi / vadr

Viral Annotation DefineR: classification and annotation of viral sequences based on RefSeq annotation
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v-build.pl 1.6.3 fails on mac os/x #80

Closed nawrockie closed 4 months ago

nawrockie commented 4 months ago

v-build.pl NC_001474 test fails with:

ERROR in vdr_EutilsFetchToFile, problem fetching NC_001474 (undefined)

Even when computer is online. This is similar to https://github.com/ncbi/vadr/issues/62 but the resolution for that issue was to connect to the internet. That doesn't solve this issue.

nawrockie commented 4 months ago

I tracked this down to an issue with Certificate Authorities and found a fix for at least my instance of the problem - requiring the Mozilla::CA module. This perl module was not installed on the mac/osx systems I encountered the problem with and after I installed it with cpan install Mozilla::CA the issue was resolved.

"Fixed" as of commit 2a047f2, which adds a use Mozilla::CA; line to v-build.pl and so alerts user that this module needs to be installed. That commit also adds a note about installing Mozilla::CA to the install documentation.