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AG: process_rdf/Mapping Labels step fails for GAZ, DRON and NCBITAXON #250

Open alexskr opened 1 year ago

alexskr commented 1 year ago

process_rdf fails for GAZ, DRON, and NCBITAXON with AllegroGraph.

I, [2022-07-26T05:59:02.573137 #20327]  INFO -- : ["Labels asserted in 0.142379023 sec."]
I, [2022-07-26T05:59:02.573253 #20327]  INFO -- : ["Asserting 4998 mappings in <http://data.bioontology.org/ontologies/GAZ/submissions/14>"]
I, [2022-07-26T05:59:02.795192 #20327]  INFO -- : ["Mapping labels asserted in 0.219766483 sec."]
E, [2022-07-26T05:59:03.267103 #20327] ERROR -- : Failed, exception: SPARQL::Client::MalformedQuery: QUERY FAILED: Not CaaT state: nil within set #<db.agraph.sbqe::bindings-set 1[3] ?id 0(0) solutions @ #x100ce92bcf2>
I, [2022-08-12T15:18:36.639325 #14003]  INFO -- : ["Asserting 5000 mappings in <http://data.bioontology.org/ontologies/NCBITAXON/submissions/20>"]
I, [2022-08-12T15:18:36.830543 #14003]  INFO -- : ["Mapping labels asserted in 0.188451815 sec."]
E, [2022-08-12T15:18:37.958821 #14003] ERROR -- : Failed, exception: SPARQL::Client::MalformedQuery: QUERY FAILED: Not CaaT state: nil within set #<db.agraph.sbqe::bindings-set 1[3] ?id 0(0) solutions @ #x100acb0f062>