search

ncbo / goo

Graph Oriented Objects (GOO) for Ruby. A RDF/SPARQL based ORM.
http://ncbo.github.io/goo/
Other
15 stars 6 forks source link

investigate log entries generated in the AG container when running unit tests #134

Open alexskr opened 1 year ago

alexskr commented 1 year ago

When running unit tests against AG backend, AG container logs a set of suspicious events that should be investigated. 

goo-agraph-ut-1  | [2023-02-02T21:50:29.599 p77 query]  1 0/0 ?id: set was not properly disposed, while executing query (:modifiers\n  :project ?id :impossible\n  distinct solutions\n  :order (asc ?id)\n  :offset 0\n  :limit 50)
goo-agraph-ut-1  | [2023-02-02T21:50:31.921 p77 query]  1 0/0 ?id: set was not properly disposed, while executing query (:modifiers\n  :project ?id :impossible\n  distinct solutions\n  :order (asc ?id)\n  :offset 0\n  :limit 50)
goo-agraph-ut-1  | [2023-02-02T21:50:45.223 p77 query]  1 0/0 ?id: set was not properly disposed, while executing query (:modifiers\n  :project ?id :impossible\n  distinct solutions\n  :order (asc ?id)\n  :offset 0\n  :limit 50)
goo-agraph-ut-1  | [2023-02-02T21:50:52.188 p77 query]  1 0/0 ?id: set was not properly disposed, while executing query (:modifiers\n  :project ?id :impossible\n  distinct solutions\n  :order (asc ?id)\n  :offset 0\n  :limit 50)
alexskr commented 1 year ago

we are encountering similar entries in AlegroGraph container logs when running ontologies_linked_data unit tests:

2023-02-03 10:48:20 [2023-02-03T18:48:20.436 p53 query]  1 8/11 ?x0, ?x1, ?x2...: set was not properly disposed, while executing query (:modifiers\n  :project ?x0, ?x1, ?x2, ?x3\n  (:graph current\n    (:triple-query <?x0 rdfs:subClassOf http://purl.bioontology.org/ontology/STY/T051 http://data.bioontology.org/ontologies/UMLS-TST/submissions/1>\n     :estimate 21.98697 :cursor-estimate 2578.9934)\n    (:triple-query <?x1 rdfs:subClassOf ?x0 http://data.bioontology.org/ontologies/UMLS-TST/submissions/1>\n     :estimate 483.42688 :cursor-estimate 5536.0)\n    (:triple-query <?x2 rdfs:subClassOf ?x1 http://data.bioontology.org/ontologies/UMLS-TST/submissions/1>\n     :estimate 10629.093 :cursor-estimate 5536.0)\n    (:triple-query <?x3 rdfs:subClassOf ?x2 http://data.bioontology.org/ontologies/UMLS-TST/submissions/1>\n     :estimate 5536.0 :cursor-estimate 5536.0))\n  :limit 1)
2023-02-03 10:48:20 [2023-02-03T18:48:20.437 p53 query]  1 7/7 ?x0, ?x1, ?x2: set was not properly disposed, while executing query (:modifiers\n  :project ?x0, ?x1, ?x2\n  (:graph current\n    (:triple-query <?x0 rdfs:subClassOf http://purl.bioontology.org/ontology/STY/T051 http://data.bioontology.org/ontologies/UMLS-TST/submissions/1>\n     :estimate 21.98697 :cursor-estimate 2578.9934)\n    (:triple-query <?x1 rdfs:subClassOf ?x0 http://data.bioontology.org/ontologies/UMLS-TST/submissions/1>\n     :estimate 483.42688 :cursor-estimate 5536.0)\n    (:triple-query <?x2 rdfs:subClassOf ?x1 http://data.bioontology.org/ontologies/UMLS-TST/submissions/1>\n     :estimate 5536.0 :cursor-estimate 5536.0))\n  :limit 1)
2023-02-03 10:48:20 [2023-02-03T18:48:20.438 p53 query]  1 2/2 ?x0, ?x1: set was not properly disposed, while executing query (:modifiers\n  :project ?x0, ?x1\n  (:graph current\n    (:triple-query <?x0 rdfs:subClassOf http://purl.bioontology.org/ontology/STY/T051 http://data.bioontology.org/ontologies/UMLS-TST/submissions/1>\n     :estimate 21.98697 :cursor-estimate 2578.9934)\n    (:triple-query <?x1 rdfs:subClassOf ?x0 http://data.bioontology.org/ontologies/UMLS-TST/submissions/1>\n     :estimate 5536.0 :cursor-estimate 5536.0))\n  :limit 1)
2023-02-03 10:48:20 [2023-02-03T18:48:20.439 p53 query]  1 32/34 ?x0, ?x1, ?x2...: set was not properly disposed, while executing query (:modifiers\n  :project ?x0, ?x1, ?x2, ?x3\n  (:graph current\n    (:triple-query <?x0 rdfs:subClassOf http://purl.bioontology.org/ontology/STY/T071 http://data.bioontology.org/ontologies/UMLS-TST/submissions/1>\n     :estimate 21.98697 :cursor-estimate 2578.9934)\n    (:triple-query <?x1 rdfs:subClassOf ?x0 http://data.bioontology.org/ontologies/UMLS-TST/submissions/1>\n     :estimate 483.42688 :cursor-estimate 5536.0)\n    (:triple-query <?x2 rdfs:subClassOf ?x1 http://data.bioontology.org/ontologies/UMLS-TST/submissions/1>\n     :estimate 10629.093 :cursor-estimate 5536.0)\n    (:triple-query <?x3 rdfs:subClassOf ?x2 http://data.bioontology.org/ontologies/UMLS-TST/submissions/1>\n     :estimate 5536.0 :cursor-estimate 5536.0))\n  :limit 1)
2023-02-03 10:48:20 [2023-02-03T18:48:20.440 p53 query]  1 13/13 ?x0, ?x1, ?x2: set was not properly disposed, while executing query (:modifiers\n  :project ?x0, ?x1, ?x2\n  (:graph current\n    (:triple-query <?x0 rdfs:subClassOf http://purl.bioontology.org/ontology/STY/T071 http://data.bioontology.org/ontologies/UMLS-TST/submissions/1>\n     :estimate 21.98697 :cursor-estimate 2578.9934)\n    (:triple-query <?x1 rdfs:subClassOf ?x0 http://data.bioontology.org/ontologies/UMLS-TST/submissions/1>\n     :estimate 483.42688 :cursor-estimate 5536.0)\n    (:triple-query <?x2 rdfs:subClassOf ?x1 http://data.bioontology.org/ontologies/UMLS-TST/submissions/1>\n     :estimate 5536.0 :cursor-estimate 5536.0))\n  :limit 1)
2023-02-03 10:48:20 [2023-02-03T18:48:20.441 p53 query]  1 2/2 ?x0, ?x1: set was not properly disposed, while executing query (:modifiers\n  :project ?x0, ?x1\n  (:graph current\n    (:triple-query <?x0 rdfs:subClassOf http://purl.bioontology.org/ontology/STY/T071 http://data.bioontology.org/ontologies/UMLS-TST/submissions/1>\n     :estimate 21.98697 :cursor-estimate 2578.9934)\n    (:triple-query <?x1 rdfs:subClassOf ?x0 http://data.bioontology.org/ontologies/UMLS-TST/submissions/1>\n     :estimate 5536.0 :cursor-estimate 5536.0))\n  :limit 1)