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Unit tests pass when they should fail #6

Open alexskr opened 7 years ago

alexskr commented 7 years ago

there was a configuration problem with the jenkins job running unit tests which should have caused unit test failure; however, unit tests passed successfully

# Running tests:

I, [2017-02-17T13:32:06.726533 #19039]  INFO -- : UMLS auto-pull false
I, [2017-02-17T13:32:06.830106 #19039]  INFO -- : Checking download for TEST-ONT-0
I, [2017-02-17T13:32:06.830169 #19039]  INFO -- : Location: http://localhost:56554/
127.0.0.1 - - [17/Feb/2017:13:32:06 PST] "HEAD / HTTP/1.1" 200 0
- -> /
I, [2017-02-17T13:32:06.836062 #19039]  INFO -- : New file found for TEST-ONT-0
old: 3f6ee6284fbe3fd1a9d115f6cc110ebb
new: dda00d1aea17a3bf3fdfd6ac8be09fce
127.0.0.1 - - [17/Feb/2017:13:32:06 PST] "GET / HTTP/1.1" 200 381766
- -> /
I, [2017-02-17T13:32:07.072483 #19039]  INFO -- : OntologyPull created a new submission (2) for ontology TEST-ONT-0
I, [2017-02-17T13:32:08.210718 #19039]  INFO -- : UMLS auto-pull false
127.0.0.1 - - [17/Feb/2017:13:32:08 PST] "HEAD / HTTP/1.1" 200 0
- -> /
I, [2017-02-17T13:32:08.269761 #19039]  INFO -- : Checking download for TEST-ONT-0
I, [2017-02-17T13:32:08.269811 #19039]  INFO -- : Location: http://localhost:56554/
I, [2017-02-17T13:32:08.274929 #19039]  INFO -- : New file found for TEST-ONT-0
old: 41004ea5931d0c0a98f1e1379ccab36b
new: dda00d1aea17a3bf3fdfd6ac8be09fce
127.0.0.1 - - [17/Feb/2017:13:32:08 PST] "GET / HTTP/1.1" 200 381766
- -> /
I, [2017-02-17T13:32:08.523507 #19039]  INFO -- : OntologyPull created a new submission (3) for ontology TEST-ONT-0
.I, [2017-02-17T13:32:09.393378 #19039]  INFO -- : UMLS auto-pull false
.[2017-02-17 13:32:09] INFO  WEBrick 1.3.1
[2017-02-17 13:32:09] INFO  ruby 2.3.3 (2016-11-21) [x86_64-linux]
[2017-02-17 13:32:09] INFO  WEBrick::HTTPServer#start: pid=19039 port=63446
[2017-02-17 13:32:10] INFO  going to shutdown ...
[2017-02-17 13:32:10] INFO  WEBrick::HTTPServer#start done.
[2017-02-17 13:32:13] INFO  WEBrick 1.3.1
I, [2017-02-17T13:32:13.073185 #19039]  INFO -- : UMLS auto-pull false
[2017-02-17 13:32:13] INFO  ruby 2.3.3 (2016-11-21) [x86_64-linux]
[2017-02-17 13:32:13] INFO  WEBrick::HTTPServer#start: pid=19039 port=63446
127.0.0.1 - - [17/Feb/2017:13:32:13 PST] "HEAD / HTTP/1.1" 404 0
- -> /
I, [2017-02-17T13:32:13.131966 #19039]  INFO -- : RemoteFileException: No submission file at pull location http://localhost:63446 for ontology TEST-ONT-0.
[2017-02-17 13:32:13] INFO  going to shutdown ...
[2017-02-17 13:32:13] INFO  WEBrick::HTTPServer#start done.
.[2017-02-17 13:32:19] INFO  going to shutdown ...
[2017-02-17 13:32:19] INFO  WEBrick::HTTPServer#start done.
.I, [2017-02-17T13:32:22.604965 #19039]  INFO -- : Starting processing of http://data.bioontology.org/ontologies/TEST-ONT-1/submissions/1
I, [2017-02-17T13:32:22.715018 #19039]  INFO -- : Logging parsing output to ./test/data/ontology_files/repo/TEST-ONT-1/1/parsing.log
D, [2017-02-17T13:32:29.389729 #19039] DEBUG -- : Exception processing http://data.bioontology.org/ontologies/TEST-ONT-1/submissions/1
E, [2017-02-17T13:32:29.389869 #19039] ERROR -- : No such file or directory @ rb_sysopen - ../../reports/ontologies_report.json
/srv/jenkins/jobs/NCBO_OntCron_MasterTest/workspace/lib/ncbo_cron/ontologies_report.rb:105:in `initialize'
    /srv/jenkins/jobs/NCBO_OntCron_MasterTest/workspace/lib/ncbo_cron/ontologies_report.rb:105:in `open'
    /srv/jenkins/jobs/NCBO_OntCron_MasterTest/workspace/lib/ncbo_cron/ontologies_report.rb:105:in `refresh_report'
    /srv/jenkins/jobs/NCBO_OntCron_MasterTest/workspace/lib/ncbo_cron/ontology_submission_parser.rb:189:in `process_submission'
    /srv/jenkins/jobs/NCBO_OntCron_MasterTest/workspace/lib/ncbo_cron/ontology_submission_parser.rb:47:in `block in process_queue_submissions'
    /srv/jenkins/jobs/NCBO_OntCron_MasterTest/workspace/lib/ncbo_cron/ontology_submission_parser.rb:40:in `each'
    /srv/jenkins/jobs/NCBO_OntCron_MasterTest/workspace/lib/ncbo_cron/ontology_submission_parser.rb:40:in `process_queue_submissions'
    /srv/jenkins/jobs/NCBO_OntCron_MasterTest/workspace/test/test_ontology_submission_parser.rb:92:in `test_parse_submissions'
    /var/lib/jenkins/.rbenv/versions/2.3.3/lib/ruby/gems/2.3.0/gems/test-unit-minitest-0.9.1/lib/test/unit.rb:869:in `run_test'
    /var/lib/jenkins/.rbenv/versions/2.3.3/lib/ruby/gems/2.3.0/gems/minitest-4.7.5/lib/minitest/unit.rb:1258:in `run'
    /var/lib/jenkins/.rbenv/versions/2.3.3/lib/ruby/gems/2.3.0/gems/minitest-4.7.5/lib/minitest/unit.rb:933:in `block in _run_suite'
    /var/lib/jenkins/.rbenv/versions/2.3.3/lib/ruby/gems/2.3.0/gems/minitest-4.7.5/lib/minitest/unit.rb:926:in `map'
    /var/lib/jenkins/.rbenv/versions/2.3.3/lib/ruby/gems/2.3.0/gems/minitest-4.7.5/lib/minitest/unit.rb:926:in `_run_suite'
    /srv/jenkins/jobs/NCBO_OntCron_MasterTest/workspace/test/test_case.rb:82:in `_run_suite'
    /var/lib/jenkins/.rbenv/versions/2.3.3/lib/ruby/gems/2.3.0/gems/minitest-4.7.5/lib/minitest/unit.rb:907:in `block in _run_suites'
    /var/lib/jenkins/.rbenv/versions/2.3.3/lib/ruby/gems/2.3.0/gems/minitest-4.7.5/lib/minitest/unit.rb:907:in `map'
    /var/lib/jenkins/.rbenv/versions/2.3.3/lib/ruby/gems/2.3.0/gems/minitest-4.7.5/lib/minitest/unit.rb:907:in `_run_suites'
    /srv/jenkins/jobs/NCBO_OntCron_MasterTest/workspace/test/test_case.rb:72:in `_run_suites'
    /var/lib/jenkins/.rbenv/versions/2.3.3/lib/ruby/gems/2.3.0/gems/minitest-4.7.5/lib/minitest/unit.rb:877:in `_run_anything'
    /var/lib/jenkins/.rbenv/versions/2.3.3/lib/ruby/gems/2.3.0/gems/minitest-4.7.5/lib/minitest/unit.rb:1085:in `run_tests'
    /var/lib/jenkins/.rbenv/versions/2.3.3/lib/ruby/gems/2.3.0/gems/minitest-4.7.5/lib/minitest/unit.rb:1072:in `block in _run'
    /var/lib/jenkins/.rbenv/versions/2.3.3/lib/ruby/gems/2.3.0/gems/minitest-4.7.5/lib/minitest/unit.rb:1071:in `each'
    /var/lib/jenkins/.rbenv/versions/2.3.3/lib/ruby/gems/2.3.0/gems/minitest-4.7.5/lib/minitest/unit.rb:1071:in `_run'
    /var/lib/jenkins/.rbenv/versions/2.3.3/lib/ruby/gems/2.3.0/gems/minitest-4.7.5/lib/minitest/unit.rb:1059:in `run'
    /var/lib/jenkins/.rbenv/versions/2.3.3/lib/ruby/gems/2.3.0/gems/test-unit-minitest-0.9.1/lib/test/unit.rb:27:in `run'
    /var/lib/jenkins/.rbenv/versions/2.3.3/lib/ruby/gems/2.3.0/gems/test-unit-minitest-0.9.1/lib/test/unit.rb:780:in `run'
    /var/lib/jenkins/.rbenv/versions/2.3.3/lib/ruby/gems/2.3.0/gems/test-unit-minitest-0.9.1/lib/test/unit.rb:372:in `block (2 levels) in autorun'
    /var/lib/jenkins/.rbenv/versions/2.3.3/lib/ruby/gems/2.3.0/gems/test-unit-minitest-0.9.1/lib/test/unit.rb:33:in `run_once'
    /var/lib/jenkins/.rbenv/versions/2.3.3/lib/ruby/gems/2.3.0/gems/test-unit-minitest-0.9.1/lib/test/unit.rb:371:in `block in autorun'
I, [2017-02-17T13:32:29.390480 #19039]  INFO -- : Starting processing of http://data.bioontology.org/ontologies/TEST-ONT-0/submissions/1
I, [2017-02-17T13:32:29.498807 #19039]  INFO -- : Logging parsing output to ./test/data/ontology_files/repo/TEST-ONT-0/1/parsing.log
D, [2017-02-17T13:32:42.579116 #19039] DEBUG -- : Exception processing http://data.bioontology.org/ontologies/TEST-ONT-0/submissions/1
E, [2017-02-17T13:32:42.579289 #19039] ERROR -- : No such file or directory @ rb_sysopen - ../../reports/ontologies_report.json
/srv/jenkins/jobs/NCBO_OntCron_MasterTest/workspace/lib/ncbo_cron/ontologies_report.rb:105:in `initialize'
    /srv/jenkins/jobs/NCBO_OntCron_MasterTest/workspace/lib/ncbo_cron/ontologies_report.rb:105:in `open'
    /srv/jenkins/jobs/NCBO_OntCron_MasterTest/workspace/lib/ncbo_cron/ontologies_report.rb:105:in `refresh_report'
    /srv/jenkins/jobs/NCBO_OntCron_MasterTest/workspace/lib/ncbo_cron/ontology_submission_parser.rb:189:in `process_submission'
    /srv/jenkins/jobs/NCBO_OntCron_MasterTest/workspace/lib/ncbo_cron/ontology_submission_parser.rb:47:in `block in process_queue_submissions'
    /srv/jenkins/jobs/NCBO_OntCron_MasterTest/workspace/lib/ncbo_cron/ontology_submission_parser.rb:40:in `each'
    /srv/jenkins/jobs/NCBO_OntCron_MasterTest/workspace/lib/ncbo_cron/ontology_submission_parser.rb:40:in `process_queue_submissions'
    /srv/jenkins/jobs/NCBO_OntCron_MasterTest/workspace/test/test_ontology_submission_parser.rb:92:in `test_parse_submissions'
    /var/lib/jenkins/.rbenv/versions/2.3.3/lib/ruby/gems/2.3.0/gems/test-unit-minitest-0.9.1/lib/test/unit.rb:869:in `run_test'
    /var/lib/jenkins/.rbenv/versions/2.3.3/lib/ruby/gems/2.3.0/gems/minitest-4.7.5/lib/minitest/unit.rb:1258:in `run'
    /var/lib/jenkins/.rbenv/versions/2.3.3/lib/ruby/gems/2.3.0/gems/minitest-4.7.5/lib/minitest/unit.rb:933:in `block in _run_suite'
    /var/lib/jenkins/.rbenv/versions/2.3.3/lib/ruby/gems/2.3.0/gems/minitest-4.7.5/lib/minitest/unit.rb:926:in `map'
    /var/lib/jenkins/.rbenv/versions/2.3.3/lib/ruby/gems/2.3.0/gems/minitest-4.7.5/lib/minitest/unit.rb:926:in `_run_suite'
    /srv/jenkins/jobs/NCBO_OntCron_MasterTest/workspace/test/test_case.rb:82:in `_run_suite'
    /var/lib/jenkins/.rbenv/versions/2.3.3/lib/ruby/gems/2.3.0/gems/minitest-4.7.5/lib/minitest/unit.rb:907:in `block in _run_suites'
    /var/lib/jenkins/.rbenv/versions/2.3.3/lib/ruby/gems/2.3.0/gems/minitest-4.7.5/lib/minitest/unit.rb:907:in `map'
    /var/lib/jenkins/.rbenv/versions/2.3.3/lib/ruby/gems/2.3.0/gems/minitest-4.7.5/lib/minitest/unit.rb:907:in `_run_suites'
    /srv/jenkins/jobs/NCBO_OntCron_MasterTest/workspace/test/test_case.rb:72:in `_run_suites'
    /var/lib/jenkins/.rbenv/versions/2.3.3/lib/ruby/gems/2.3.0/gems/minitest-4.7.5/lib/minitest/unit.rb:877:in `_run_anything'
    /var/lib/jenkins/.rbenv/versions/2.3.3/lib/ruby/gems/2.3.0/gems/minitest-4.7.5/lib/minitest/unit.rb:1085:in `run_tests'
    /var/lib/jenkins/.rbenv/versions/2.3.3/lib/ruby/gems/2.3.0/gems/minitest-4.7.5/lib/minitest/unit.rb:1072:in `block in _run'
    /var/lib/jenkins/.rbenv/versions/2.3.3/lib/ruby/gems/2.3.0/gems/minitest-4.7.5/lib/minitest/unit.rb:1071:in `each'
    /var/lib/jenkins/.rbenv/versions/2.3.3/lib/ruby/gems/2.3.0/gems/minitest-4.7.5/lib/minitest/unit.rb:1071:in `_run'
    /var/lib/jenkins/.rbenv/versions/2.3.3/lib/ruby/gems/2.3.0/gems/minitest-4.7.5/lib/minitest/unit.rb:1059:in `run'
    /var/lib/jenkins/.rbenv/versions/2.3.3/lib/ruby/gems/2.3.0/gems/test-unit-minitest-0.9.1/lib/test/unit.rb:27:in `run'
    /var/lib/jenkins/.rbenv/versions/2.3.3/lib/ruby/gems/2.3.0/gems/test-unit-minitest-0.9.1/lib/test/unit.rb:780:in `run'
    /var/lib/jenkins/.rbenv/versions/2.3.3/lib/ruby/gems/2.3.0/gems/test-unit-minitest-0.9.1/lib/test/unit.rb:372:in `block (2 levels) in autorun'
    /var/lib/jenkins/.rbenv/versions/2.3.3/lib/ruby/gems/2.3.0/gems/test-unit-minitest-0.9.1/lib/test/unit.rb:33:in `run_once'
    /var/lib/jenkins/.rbenv/versions/2.3.3/lib/ruby/gems/2.3.0/gems/test-unit-minitest-0.9.1/lib/test/unit.rb:371:in `block in autorun'
I, [2017-02-17T13:32:42.579941 #19039]  INFO -- : Starting processing of http://data.bioontology.org/ontologies/TEST-ONT-1/submissions/2
I, [2017-02-17T13:32:42.689037 #19039]  INFO -- : Logging parsing output to ./test/data/ontology_files/repo/TEST-ONT-1/2/parsing.log
D, [2017-02-17T13:32:42.784226 #19039] DEBUG -- : Exception processing http://data.bioontology.org/ontologies/TEST-ONT-1/submissions/2
E, [2017-02-17T13:32:42.784357 #19039] ERROR -- : The submission TEST-ONT-1/submissions/2 cannot be indexed because it has not been successfully parsed
/var/lib/jenkins/.rbenv/versions/2.3.3/lib/ruby/gems/2.3.0/bundler/gems/ontologies_linked_data-cf50b5737404/lib/ontologies_linked_data/models/ontology_submission.rb:871:in `process_submission'
    /srv/jenkins/jobs/NCBO_OntCron_MasterTest/workspace/lib/ncbo_cron/ontology_submission_parser.rb:178:in `process_submission'
    /srv/jenkins/jobs/NCBO_OntCron_MasterTest/workspace/lib/ncbo_cron/ontology_submission_parser.rb:47:in `block in process_queue_submissions'
    /srv/jenkins/jobs/NCBO_OntCron_MasterTest/workspace/lib/ncbo_cron/ontology_submission_parser.rb:40:in `each'
    /srv/jenkins/jobs/NCBO_OntCron_MasterTest/workspace/lib/ncbo_cron/ontology_submission_parser.rb:40:in `process_queue_submissions'
    /srv/jenkins/jobs/NCBO_OntCron_MasterTest/workspace/test/test_ontology_submission_parser.rb:92:in `test_parse_submissions'
    /var/lib/jenkins/.rbenv/versions/2.3.3/lib/ruby/gems/2.3.0/gems/test-unit-minitest-0.9.1/lib/test/unit.rb:869:in `run_test'
    /var/lib/jenkins/.rbenv/versions/2.3.3/lib/ruby/gems/2.3.0/gems/minitest-4.7.5/lib/minitest/unit.rb:1258:in `run'
    /var/lib/jenkins/.rbenv/versions/2.3.3/lib/ruby/gems/2.3.0/gems/minitest-4.7.5/lib/minitest/unit.rb:933:in `block in _run_suite'
    /var/lib/jenkins/.rbenv/versions/2.3.3/lib/ruby/gems/2.3.0/gems/minitest-4.7.5/lib/minitest/unit.rb:926:in `map'
    /var/lib/jenkins/.rbenv/versions/2.3.3/lib/ruby/gems/2.3.0/gems/minitest-4.7.5/lib/minitest/unit.rb:926:in `_run_suite'
    /srv/jenkins/jobs/NCBO_OntCron_MasterTest/workspace/test/test_case.rb:82:in `_run_suite'
    /var/lib/jenkins/.rbenv/versions/2.3.3/lib/ruby/gems/2.3.0/gems/minitest-4.7.5/lib/minitest/unit.rb:907:in `block in _run_suites'
    /var/lib/jenkins/.rbenv/versions/2.3.3/lib/ruby/gems/2.3.0/gems/minitest-4.7.5/lib/minitest/unit.rb:907:in `map'
    /var/lib/jenkins/.rbenv/versions/2.3.3/lib/ruby/gems/2.3.0/gems/minitest-4.7.5/lib/minitest/unit.rb:907:in `_run_suites'
    /srv/jenkins/jobs/NCBO_OntCron_MasterTest/workspace/test/test_case.rb:72:in `_run_suites'
    /var/lib/jenkins/.rbenv/versions/2.3.3/lib/ruby/gems/2.3.0/gems/minitest-4.7.5/lib/minitest/unit.rb:877:in `_run_anything'
    /var/lib/jenkins/.rbenv/versions/2.3.3/lib/ruby/gems/2.3.0/gems/minitest-4.7.5/lib/minitest/unit.rb:1085:in `run_tests'
    /var/lib/jenkins/.rbenv/versions/2.3.3/lib/ruby/gems/2.3.0/gems/minitest-4.7.5/lib/minitest/unit.rb:1072:in `block in _run'
    /var/lib/jenkins/.rbenv/versions/2.3.3/lib/ruby/gems/2.3.0/gems/minitest-4.7.5/lib/minitest/unit.rb:1071:in `each'
    /var/lib/jenkins/.rbenv/versions/2.3.3/lib/ruby/gems/2.3.0/gems/minitest-4.7.5/lib/minitest/unit.rb:1071:in `_run'
    /var/lib/jenkins/.rbenv/versions/2.3.3/lib/ruby/gems/2.3.0/gems/minitest-4.7.5/lib/minitest/unit.rb:1059:in `run'
    /var/lib/jenkins/.rbenv/versions/2.3.3/lib/ruby/gems/2.3.0/gems/test-unit-minitest-0.9.1/lib/test/unit.rb:27:in `run'
    /var/lib/jenkins/.rbenv/versions/2.3.3/lib/ruby/gems/2.3.0/gems/test-unit-minitest-0.9.1/lib/test/unit.rb:780:in `run'
    /var/lib/jenkins/.rbenv/versions/2.3.3/lib/ruby/gems/2.3.0/gems/test-unit-minitest-0.9.1/lib/test/unit.rb:372:in `block (2 levels) in autorun'
    /var/lib/jenkins/.rbenv/versions/2.3.3/lib/ruby/gems/2.3.0/gems/test-unit-minitest-0.9.1/lib/test/unit.rb:33:in `run_once'
    /var/lib/jenkins/.rbenv/versions/2.3.3/lib/ruby/gems/2.3.0/gems/test-unit-minitest-0.9.1/lib/test/unit.rb:371:in `block in autorun'
I, [2017-02-17T13:32:42.789449 #19039]  INFO -- : Starting processing of http://data.bioontology.org/ontologies/TEST-ONT-0/submissions/2
I, [2017-02-17T13:32:42.893950 #19039]  INFO -- : Logging parsing output to ./test/data/ontology_files/repo/TEST-ONT-0/2/parsing.log
D, [2017-02-17T13:32:59.171235 #19039] DEBUG -- : Exception processing http://data.bioontology.org/ontologies/TEST-ONT-0/submissions/2
E, [2017-02-17T13:32:59.171367 #19039] ERROR -- : No such file or directory @ rb_sysopen - ../../reports/ontologies_report.json
/srv/jenkins/jobs/NCBO_OntCron_MasterTest/workspace/lib/ncbo_cron/ontologies_report.rb:105:in `initialize'
    /srv/jenkins/jobs/NCBO_OntCron_MasterTest/workspace/lib/ncbo_cron/ontologies_report.rb:105:in `open'
    /srv/jenkins/jobs/NCBO_OntCron_MasterTest/workspace/lib/ncbo_cron/ontologies_report.rb:105:in `refresh_report'
    /srv/jenkins/jobs/NCBO_OntCron_MasterTest/workspace/lib/ncbo_cron/ontology_submission_parser.rb:189:in `process_submission'
    /srv/jenkins/jobs/NCBO_OntCron_MasterTest/workspace/lib/ncbo_cron/ontology_submission_parser.rb:47:in `block in process_queue_submissions'
    /srv/jenkins/jobs/NCBO_OntCron_MasterTest/workspace/lib/ncbo_cron/ontology_submission_parser.rb:40:in `each'
    /srv/jenkins/jobs/NCBO_OntCron_MasterTest/workspace/lib/ncbo_cron/ontology_submission_parser.rb:40:in `process_queue_submissions'
    /srv/jenkins/jobs/NCBO_OntCron_MasterTest/workspace/test/test_ontology_submission_parser.rb:97:in `test_parse_submissions'
    /var/lib/jenkins/.rbenv/versions/2.3.3/lib/ruby/gems/2.3.0/gems/test-unit-minitest-0.9.1/lib/test/unit.rb:869:in `run_test'
    /var/lib/jenkins/.rbenv/versions/2.3.3/lib/ruby/gems/2.3.0/gems/minitest-4.7.5/lib/minitest/unit.rb:1258:in `run'
    /var/lib/jenkins/.rbenv/versions/2.3.3/lib/ruby/gems/2.3.0/gems/minitest-4.7.5/lib/minitest/unit.rb:933:in `block in _run_suite'
    /var/lib/jenkins/.rbenv/versions/2.3.3/lib/ruby/gems/2.3.0/gems/minitest-4.7.5/lib/minitest/unit.rb:926:in `map'
    /var/lib/jenkins/.rbenv/versions/2.3.3/lib/ruby/gems/2.3.0/gems/minitest-4.7.5/lib/minitest/unit.rb:926:in `_run_suite'
    /srv/jenkins/jobs/NCBO_OntCron_MasterTest/workspace/test/test_case.rb:82:in `_run_suite'
    /var/lib/jenkins/.rbenv/versions/2.3.3/lib/ruby/gems/2.3.0/gems/minitest-4.7.5/lib/minitest/unit.rb:907:in `block in _run_suites'
    /var/lib/jenkins/.rbenv/versions/2.3.3/lib/ruby/gems/2.3.0/gems/minitest-4.7.5/lib/minitest/unit.rb:907:in `map'
    /var/lib/jenkins/.rbenv/versions/2.3.3/lib/ruby/gems/2.3.0/gems/minitest-4.7.5/lib/minitest/unit.rb:907:in `_run_suites'
    /srv/jenkins/jobs/NCBO_OntCron_MasterTest/workspace/test/test_case.rb:72:in `_run_suites'
    /var/lib/jenkins/.rbenv/versions/2.3.3/lib/ruby/gems/2.3.0/gems/minitest-4.7.5/lib/minitest/unit.rb:877:in `_run_anything'
    /var/lib/jenkins/.rbenv/versions/2.3.3/lib/ruby/gems/2.3.0/gems/minitest-4.7.5/lib/minitest/unit.rb:1085:in `run_tests'
    /var/lib/jenkins/.rbenv/versions/2.3.3/lib/ruby/gems/2.3.0/gems/minitest-4.7.5/lib/minitest/unit.rb:1072:in `block in _run'
    /var/lib/jenkins/.rbenv/versions/2.3.3/lib/ruby/gems/2.3.0/gems/minitest-4.7.5/lib/minitest/unit.rb:1071:in `each'
    /var/lib/jenkins/.rbenv/versions/2.3.3/lib/ruby/gems/2.3.0/gems/minitest-4.7.5/lib/minitest/unit.rb:1071:in `_run'
    /var/lib/jenkins/.rbenv/versions/2.3.3/lib/ruby/gems/2.3.0/gems/minitest-4.7.5/lib/minitest/unit.rb:1059:in `run'
    /var/lib/jenkins/.rbenv/versions/2.3.3/lib/ruby/gems/2.3.0/gems/test-unit-minitest-0.9.1/lib/test/unit.rb:27:in `run'
    /var/lib/jenkins/.rbenv/versions/2.3.3/lib/ruby/gems/2.3.0/gems/test-unit-minitest-0.9.1/lib/test/unit.rb:780:in `run'
    /var/lib/jenkins/.rbenv/versions/2.3.3/lib/ruby/gems/2.3.0/gems/test-unit-minitest-0.9.1/lib/test/unit.rb:372:in `block (2 levels) in autorun'
    /var/lib/jenkins/.rbenv/versions/2.3.3/lib/ruby/gems/2.3.0/gems/test-unit-minitest-0.9.1/lib/test/unit.rb:33:in `run_once'
    /var/lib/jenkins/.rbenv/versions/2.3.3/lib/ruby/gems/2.3.0/gems/test-unit-minitest-0.9.1/lib/test/unit.rb:371:in `block in autorun'
I, [2017-02-17T13:32:59.171985 #19039]  INFO -- : Starting processing of http://data.bioontology.org/ontologies/TEST-ONT-1/submissions/2
I, [2017-02-17T13:32:59.278593 #19039]  INFO -- : Logging parsing output to ./test/data/ontology_files/repo/TEST-ONT-1/2/parsing.log
D, [2017-02-17T13:33:08.780310 #19039] DEBUG -- : Exception processing http://data.bioontology.org/ontologies/TEST-ONT-1/submissions/2
E, [2017-02-17T13:33:08.780441 #19039] ERROR -- : No such file or directory @ rb_sysopen - ../../reports/ontologies_report.json
/srv/jenkins/jobs/NCBO_OntCron_MasterTest/workspace/lib/ncbo_cron/ontologies_report.rb:105:in `initialize'
    /srv/jenkins/jobs/NCBO_OntCron_MasterTest/workspace/lib/ncbo_cron/ontologies_report.rb:105:in `open'
    /srv/jenkins/jobs/NCBO_OntCron_MasterTest/workspace/lib/ncbo_cron/ontologies_report.rb:105:in `refresh_report'
    /srv/jenkins/jobs/NCBO_OntCron_MasterTest/workspace/lib/ncbo_cron/ontology_submission_parser.rb:189:in `process_submission'
    /srv/jenkins/jobs/NCBO_OntCron_MasterTest/workspace/lib/ncbo_cron/ontology_submission_parser.rb:47:in `block in process_queue_submissions'
    /srv/jenkins/jobs/NCBO_OntCron_MasterTest/workspace/lib/ncbo_cron/ontology_submission_parser.rb:40:in `each'
    /srv/jenkins/jobs/NCBO_OntCron_MasterTest/workspace/lib/ncbo_cron/ontology_submission_parser.rb:40:in `process_queue_submissions'
    /srv/jenkins/jobs/NCBO_OntCron_MasterTest/workspace/test/test_ontology_submission_parser.rb:97:in `test_parse_submissions'
    /var/lib/jenkins/.rbenv/versions/2.3.3/lib/ruby/gems/2.3.0/gems/test-unit-minitest-0.9.1/lib/test/unit.rb:869:in `run_test'
    /var/lib/jenkins/.rbenv/versions/2.3.3/lib/ruby/gems/2.3.0/gems/minitest-4.7.5/lib/minitest/unit.rb:1258:in `run'
    /var/lib/jenkins/.rbenv/versions/2.3.3/lib/ruby/gems/2.3.0/gems/minitest-4.7.5/lib/minitest/unit.rb:933:in `block in _run_suite'
    /var/lib/jenkins/.rbenv/versions/2.3.3/lib/ruby/gems/2.3.0/gems/minitest-4.7.5/lib/minitest/unit.rb:926:in `map'
    /var/lib/jenkins/.rbenv/versions/2.3.3/lib/ruby/gems/2.3.0/gems/minitest-4.7.5/lib/minitest/unit.rb:926:in `_run_suite'
    /srv/jenkins/jobs/NCBO_OntCron_MasterTest/workspace/test/test_case.rb:82:in `_run_suite'
    /var/lib/jenkins/.rbenv/versions/2.3.3/lib/ruby/gems/2.3.0/gems/minitest-4.7.5/lib/minitest/unit.rb:907:in `block in _run_suites'
    /var/lib/jenkins/.rbenv/versions/2.3.3/lib/ruby/gems/2.3.0/gems/minitest-4.7.5/lib/minitest/unit.rb:907:in `map'
    /var/lib/jenkins/.rbenv/versions/2.3.3/lib/ruby/gems/2.3.0/gems/minitest-4.7.5/lib/minitest/unit.rb:907:in `_run_suites'
    /srv/jenkins/jobs/NCBO_OntCron_MasterTest/workspace/test/test_case.rb:72:in `_run_suites'
    /var/lib/jenkins/.rbenv/versions/2.3.3/lib/ruby/gems/2.3.0/gems/minitest-4.7.5/lib/minitest/unit.rb:877:in `_run_anything'
    /var/lib/jenkins/.rbenv/versions/2.3.3/lib/ruby/gems/2.3.0/gems/minitest-4.7.5/lib/minitest/unit.rb:1085:in `run_tests'
    /var/lib/jenkins/.rbenv/versions/2.3.3/lib/ruby/gems/2.3.0/gems/minitest-4.7.5/lib/minitest/unit.rb:1072:in `block in _run'
    /var/lib/jenkins/.rbenv/versions/2.3.3/lib/ruby/gems/2.3.0/gems/minitest-4.7.5/lib/minitest/unit.rb:1071:in `each'
    /var/lib/jenkins/.rbenv/versions/2.3.3/lib/ruby/gems/2.3.0/gems/minitest-4.7.5/lib/minitest/unit.rb:1071:in `_run'
    /var/lib/jenkins/.rbenv/versions/2.3.3/lib/ruby/gems/2.3.0/gems/minitest-4.7.5/lib/minitest/unit.rb:1059:in `run'
    /var/lib/jenkins/.rbenv/versions/2.3.3/lib/ruby/gems/2.3.0/gems/test-unit-minitest-0.9.1/lib/test/unit.rb:27:in `run'
    /var/lib/jenkins/.rbenv/versions/2.3.3/lib/ruby/gems/2.3.0/gems/test-unit-minitest-0.9.1/lib/test/unit.rb:780:in `run'
    /var/lib/jenkins/.rbenv/versions/2.3.3/lib/ruby/gems/2.3.0/gems/test-unit-minitest-0.9.1/lib/test/unit.rb:372:in `block (2 levels) in autorun'
    /var/lib/jenkins/.rbenv/versions/2.3.3/lib/ruby/gems/2.3.0/gems/test-unit-minitest-0.9.1/lib/test/unit.rb:33:in `run_once'
    /var/lib/jenkins/.rbenv/versions/2.3.3/lib/ruby/gems/2.3.0/gems/test-unit-minitest-0.9.1/lib/test/unit.rb:371:in `block in autorun'
I, [2017-02-17T13:33:09.016850 #19039]  INFO -- : Checking graphs to delete for http://data.bioontology.org/ontologies/TEST-ONT-0
I, [2017-02-17T13:33:09.105513 #19039]  INFO -- : Deleting graph http://data.bioontology.org/ontologies/TEST-ONT-0/submissions/1 ...
I, [2017-02-17T13:33:14.110613 #19039]  INFO -- : Graph http://data.bioontology.org/ontologies/TEST-ONT-0/submissions/1 deleted in 0.004851399 sec.
I, [2017-02-17T13:33:14.110825 #19039]  INFO -- : Checking graphs to delete for http://data.bioontology.org/ontologies/TEST-ONT-1
I, [2017-02-17T13:33:14.190798 #19039]  INFO -- : Deleting graph http://data.bioontology.org/ontologies/TEST-ONT-1/submissions/1 ...
I, [2017-02-17T13:33:19.195340 #19039]  INFO -- : Graph http://data.bioontology.org/ontologies/TEST-ONT-1/submissions/1 deleted in 0.004206363 sec.
I, [2017-02-17T13:33:19.218183 #19039]  INFO -- : finish process_flush_classes
I, [2017-02-17T13:33:19.307068 #19039]  INFO -- : running first page mappings http://data.bioontology.org/ontologies/TEST-ONT-1/submissions/2
I, [2017-02-17T13:33:19.315434 #19039]  INFO -- : done 0
I, [2017-02-17T13:33:19.315496 #19039]  INFO -- : running first page classes http://data.bioontology.org/ontologies/TEST-ONT-1/submissions/2
I, [2017-02-17T13:33:19.360239 #19039]  INFO -- : done 100
I, [2017-02-17T13:33:19.360349 #19039]  INFO -- : running first page mappings http://data.bioontology.org/ontologies/TEST-ONT-0/submissions/2
I, [2017-02-17T13:33:19.368383 #19039]  INFO -- : done 0
I, [2017-02-17T13:33:19.368445 #19039]  INFO -- : running first page classes http://data.bioontology.org/ontologies/TEST-ONT-0/submissions/2
I, [2017-02-17T13:33:19.409951 #19039]  INFO -- : done 100
..D, [2017-02-17T13:33:34.913523 #19039] DEBUG -- : test_scheduled_job_locking -- running in pid 24938
D, [2017-02-17T13:33:34.913636 #24938] DEBUG -- : test_scheduled_job_locking -- Lock acquired
.================================================================================
scheduler caught exception:
test_scheduled_job_locking
/var/lib/jenkins/.rbenv/versions/2.3.3/lib/ruby/gems/2.3.0/gems/mlanett-redis-lock-0.2.7/lib/redis-lock.rb:40:in `lock'
/var/lib/jenkins/.rbenv/versions/2.3.3/lib/ruby/gems/2.3.0/gems/mlanett-redis-lock-0.2.7/lib/redis-lock.rb:234:in `lock'
/srv/jenkins/jobs/NCBO_OntCron_MasterTest/workspace/lib/ncbo_cron/scheduler.rb:50:in `block in scheduled_locking_job'
/var/lib/jenkins/.rbenv/versions/2.3.3/lib/ruby/gems/2.3.0/gems/rufus-scheduler-2.0.24/lib/rufus/sc/jobs.rb:230:in `trigger_block'
/var/lib/jenkins/.rbenv/versions/2.3.3/lib/ruby/gems/2.3.0/gems/rufus-scheduler-2.0.24/lib/rufus/sc/jobs.rb:204:in `block in trigger'
/var/lib/jenkins/.rbenv/versions/2.3.3/lib/ruby/gems/2.3.0/gems/rufus-scheduler-2.0.24/lib/rufus/sc/scheduler.rb:430:in `block in trigger_job'
================================================================================

Finished tests in 125.492891s, 0.0558 tests/s, 0.3905 assertions/s.

7 tests, 49 assertions, 0 failures, 0 errors, 0 skips"