search

ncbo / ncbo_cron

Jobs that run on a regular basis in the NCBO infrastructure
Other
2 stars 6 forks source link

ontology pull process logs errors for ontologies that are not supposed to be pulled #68

Open alexskr opened 1 year ago

alexskr commented 1 year ago

Ontology pull process logs error for ontologies that do not have pullLocation set. Those ontologies are not supposed to be pulled in the first place so this should not be considered an error. 

E, [2023-03-22T18:27:58.346106 #11150] ERROR -- : Problem retrieving ZIP3 in OntologyPull:
ZIP3 has no pullLocation
/srv/ncbo/ncbo_cron/lib/ncbo_cron/ontology_pull.rb:75:in `do_ontology_pull'
    /srv/ncbo/ncbo_cron/lib/ncbo_cron/ontology_pull.rb:36:in `block in do_remote_ontology_pull'
    /srv/ncbo/ncbo_cron/lib/ncbo_cron/ontology_pull.rb:33:in `each'
    /srv/ncbo/ncbo_cron/lib/ncbo_cron/ontology_pull.rb:33:in `do_remote_ontology_pull'
    /srv/ncbo/ncbo_cron/bin/ncbo_cron:291:in `block (3 levels) in <main>'
    /srv/ncbo/ncbo_cron/lib/ncbo_cron/scheduler.rb:65:in `block (3 levels) in scheduled_locking_job'
    /srv/ncbo/ncbo_cron/lib/ncbo_cron/scheduler.rb:51:in `fork'
    /srv/ncbo/ncbo_cron/lib/ncbo_cron/scheduler.rb:51:in `block (2 levels) in scheduled_locking_job'
    /srv/ncbo/ncbo_cron/vendor/bundle/ruby/2.7.0/gems/mlanett-redis-lock-0.2.7/lib/redis-lock.rb:43:in `lock'
    /srv/ncbo/ncbo_cron/vendor/bundle/ruby/2.7.0/gems/mlanett-redis-lock-0.2.7/lib/redis-lock.rb:234:in `lock'
    /srv/ncbo/ncbo_cron/lib/ncbo_cron/scheduler.rb:50:in `block in scheduled_locking_job'
    /srv/ncbo/ncbo_cron/vendor/bundle/ruby/2.7.0/gems/rufus-scheduler-2.0.24/lib/rufus/sc/jobs.rb:230:in `trigger_block'
    /srv/ncbo/ncbo_cron/vendor/bundle/ruby/2.7.0/gems/rufus-scheduler-2.0.24/lib/rufus/sc/jobs.rb:204:in `block in trigger'
    /srv/ncbo/ncbo_cron/vendor/bundle/ruby/2.7.0/gems/rufus-scheduler-2.0.24/lib/rufus/sc/scheduler.rb:430:in `block in trigger_job'
E, [2023-03-22T18:27:58.383609 #11150] ERROR -- : Problem retrieving ZIP5 in OntologyPull:
ZIP5 has no pullLocation
/srv/ncbo/ncbo_cron/lib/ncbo_cron/ontology_pull.rb:75:in `do_ontology_pull'
    /srv/ncbo/ncbo_cron/lib/ncbo_cron/ontology_pull.rb:36:in `block in do_remote_ontology_pull'
    /srv/ncbo/ncbo_cron/lib/ncbo_cron/ontology_pull.rb:33:in `each'
    /srv/ncbo/ncbo_cron/lib/ncbo_cron/ontology_pull.rb:33:in `do_remote_ontology_pull'
    /srv/ncbo/ncbo_cron/bin/ncbo_cron:291:in `block (3 levels) in <main>'
    /srv/ncbo/ncbo_cron/lib/ncbo_cron/scheduler.rb:65:in `block (3 levels) in scheduled_locking_job'
    /srv/ncbo/ncbo_cron/lib/ncbo_cron/scheduler.rb:51:in `fork'
    /srv/ncbo/ncbo_cron/lib/ncbo_cron/scheduler.rb:51:in `block (2 levels) in scheduled_locking_job'
    /srv/ncbo/ncbo_cron/vendor/bundle/ruby/2.7.0/gems/mlanett-redis-lock-0.2.7/lib/redis-lock.rb:43:in `lock'
    /srv/ncbo/ncbo_cron/vendor/bundle/ruby/2.7.0/gems/mlanett-redis-lock-0.2.7/lib/redis-lock.rb:234:in `lock'
    /srv/ncbo/ncbo_cron/lib/ncbo_cron/scheduler.rb:50:in `block in scheduled_locking_job'
    /srv/ncbo/ncbo_cron/vendor/bundle/ruby/2.7.0/gems/rufus-scheduler-2.0.24/lib/rufus/sc/jobs.rb:230:in `trigger_block'
    /srv/ncbo/ncbo_cron/vendor/bundle/ruby/2.7.0/gems/rufus-scheduler-2.0.24/lib/rufus/sc/jobs.rb:204:in `block in trigger'
    /srv/ncbo/ncbo_cron/vendor/bundle/ruby/2.7.0/gems/rufus-scheduler-2.0.24/lib/rufus/sc/scheduler.rb:430:in `block in trigger_job'