Open jvendetti opened 6 months ago
In case it's helpful, I'm posting a workaround from @alexskr
docker compose -f docker-compose.backend_only.yml --profile agraph up -d
It's a known issue that both 4store and AllegroGraph are started when using the agraph
profile. Use the Docker Desktop application to delete the 4store container.
This step is optional, but it may assist in avoiding insufficient memory errors with subsequent steps:
When allocating the string table failed to create shared memory segment of size 134,225,920, message: "insufficient shared memory space available"
docker compose -f docker-compose.backend_only.yml --profile agraph exec -it agraph agtool repos create ontoportal_test
In my development environment, this command often fails with insufficient shared memory errors. The only way I can created the test database is to repeatedly execute the command until it succeeds.
docker compose -f docker-compose.backend_only.yml --profile agraph exec -it agraph agtool users grant anonymous root:ontoportal_test:rw
I'm trying to execute the
ag-create-repo
dip command, but it's failing with a "no such service" message:Context
Now that we're running on AllegroGraph in production, I want to run BioPortal REST API unit tests against AllegroGraph in my local development environment (instead of against 4store, which I'm still currently doing).
For example, I want to execute the unit test suite for ontologies_linked_data like so:
But this results in an error message about a missing triplestore: