Upgrade to OWL API 4.5.13

ncbo / owlapi_wrapper

A command line utility that wraps the Java OWL-API to parse RDFS, OWL and OBO ontologies.

5 stars 9 forks source link

Upgrade to OWL API 4.5.13 #10

Closed jvendetti closed 4 years ago

jvendetti commented 4 years ago

We're currently using 4.3.2. The Protege application is on 4.5.9. Would be good to be on the latest version of the 4.x series

jvendetti commented 4 years ago

I noticed after upgrading to 4.5.13 in my local dev environment that the OWL API started throwing exceptions (at the debug level only) when parsing some ontologies:

2019-09-05T12:14:18 [main] DEBUG o.s.owlapi.util.AutoIRIMapper - Exception reading file
org.xml.sax.SAXException: null
    at org.semanticweb.owlapi.util.AutoIRIMapper.startElement(AutoIRIMapper.java:341)

Filed an issue in the OWL API issue tracker. Ignazio confirmed that the exception is benign and can be ignored.