issues
search
ncbo
/
umls2rdf
These python scripts connect to the Unified Medical Language System (UMLS) database and translate the ontologies into RDF/OWL files. This is part of the BioPortal project.
http://bioportal.bioontology.org/
Other
84
stars
37
forks
source link
issues
Newest
Newest
Most commented
Recently updated
Oldest
Least commented
Least recently updated
Use versioned source abbreviations for version numbers
#46
jvendetti
opened
2 months ago
3
E with acute accent generated incorrectly in ICD10CM TTL file
#45
jvendetti
closed
2 months ago
5
LOINC Classes over SKOS Concepts
#44
riannella
opened
1 year ago
1
Use LOINC URIs?
#43
riannella
opened
1 year ago
0
take into account MRREL concepts in different datasources
#42
fpriyatna
opened
2 years ago
3
Missing lots of triples caused by overly selective query
#41
fpriyatna
opened
2 years ago
6
Centralized place for information on loading datasource
#40
fpriyatna
opened
2 years ago
0
loss of information in SNOMED_CT?
#39
justin2004
opened
2 years ago
0
label creator
#38
graybeal
closed
3 years ago
0
Questions about umls2rdf
#37
bbartley
closed
3 years ago
1
feat : update to python3
#36
daviddexter
closed
3 months ago
0
RKY-1777 Created rxnorm2rds
#35
katyberg
closed
4 years ago
1
Remove CPT from umls.conf before the next import (2020AA)
#34
jvendetti
closed
3 years ago
0
mysqlclient instead of MySQLdb?
#33
turbomam
closed
2 months ago
2
French version of MST-FRE isn't French
#32
graybeal
closed
2 months ago
4
MESH concept hierarchy in BioPortal differs from NLM sites
#31
jvendetti
opened
4 years ago
0
Some RXCUI values possibly incorrect in RXNORM
#30
jvendetti
opened
5 years ago
0
Still "writing" MTHSPL triples after 24 hrs, even with 244 GB RAM
#29
turbomam
opened
5 years ago
2
Incorrect encoding introduced during UMLS import
#28
mdorf
closed
5 years ago
5
Remove NDFRT and add MEDRT to umls.conf before the next import (2018AB)
#27
mdorf
opened
6 years ago
5
MRSAT and attributes on RELs
#26
rwynne
closed
5 years ago
0
Documentation tips for Windows 10
#25
rwynne
closed
6 years ago
1
Documentation suggestion
#24
rwynne
closed
6 years ago
3
Problems generating some UMLS2018AA sources with umls2rdf
#23
zzgulu
opened
6 years ago
9
Python version?
#22
safrant
closed
7 years ago
3
retired concepts
#21
zzgulu
opened
7 years ago
10
Wrong generation of literals
#20
vemonet
closed
2 months ago
1
More conf possibilities and fix lang codes
#19
vemonet
closed
7 years ago
3
Loading on CODE vs on CUI
#18
zaihrayeu
closed
8 years ago
2
questions about the UMLS 2 RDF script
#17
zaihrayeu
closed
8 years ago
4
update configuration sample to use the latest version name
#16
MkhIr
closed
8 years ago
0
update readme to warn about sources with no code.
#15
MkhIr
closed
8 years ago
0
Let the user choose to include or not STY
#14
vemonet
closed
8 years ago
0
Choosing the base URI of UMLS Semantic Types
#13
vemonet
closed
9 years ago
0
Adding the possibility to choose the UMLS base URI
#12
vemonet
closed
9 years ago
3
Generate OWL properties for MRREL relations
#11
msalvadores
closed
10 years ago
0
Non-UTF8 characters in ICD9CM and ICD10CM
#10
msalvadores
closed
10 years ago
0
Proper export of the UMLS Semantic Network
#9
jonquet
closed
10 years ago
5
Assign proper language to labels when exporting sources other than English ones
#8
jonquet
closed
10 years ago
1
Fix the \" characters that cause a parsing bug
#7
jonquet
closed
10 years ago
3
Error MySQL dropping connection / running out of memory
#6
angellr
closed
11 years ago
6
Error Importing Turtle Files into Protege 4.3 - Help Requested
#5
angellr
closed
10 years ago
3
also added spaces between items in lists to appease fussy TTL parsers
#4
admackin
closed
11 years ago
1
add a space between type specifiers and ';' so that fussier TTL parsers don't complain (and also for consistency)
#3
admackin
closed
11 years ago
1
Memory Error during converting large terminologies
#2
xraywu
closed
11 years ago
7
Check for output directory before RDF generation. Supply default.
#1
jmandel
closed
12 years ago
1