Open jvendetti opened 5 years ago
A quick take with limited time:
That failure to transform message is pretty big if you paste the whole thing (I pasted my example below, for AdminMetadata). Scroll right to see the whole JSON for the response.
And it looks like it's an incomplete list of mappings—in the case I had, there was one mapping, to ri:AdminMetadata, but at the end of that mapping—when there should have been an identifier for that mapping, in
{"@vocab":"http://data.bioontology.org/metadata/"}}], "process":null, "@id":"", "@type":"http://data.bioontology.org/metadata/Mapping"}}'
the identifier for the mapping is null. Whereas I think normally in the REST JSON response, there would be an identifier there. So the message further down
Caused by: Class$S98: (TypeError) : Cannot read property 'b' of null
seems consistent with the fact there was no ID for that mapping.
Caused by: Class$S1402: failed to transform '{"0":{"id":null, "source":"LOOM", "classes":[{"@id":"http://id.loc.gov/ontologies/bibframe/AdminMetadata", "@type":"http://www.w3.org/2002/07/owl#Class", "links":{"self":"https://data.biblio.ontoportal.org/ontologies/BIBFRAME/classes/http%3A%2F%2Fid.loc.gov%2Fontologies%2Fbibframe%2FAdminMetadata", "ontology":"https://data.biblio.ontoportal.org/ontologies/BIBFRAME", "children":"https://data.biblio.ontoportal.org/ontologies/BIBFRAME/classes/http%3A%2F%2Fid.loc.gov%2Fontologies%2Fbibframe%2FAdminMetadata/children", "parents":"https://data.biblio.ontoportal.org/ontologies/BIBFRAME/classes/http%3A%2F%2Fid.loc.gov%2Fontologies%2Fbibframe%2FAdminMetadata/parents", "descendants":"https://data.biblio.ontoportal.org/ontologies/BIBFRAME/classes/http%3A%2F%2Fid.loc.gov%2Fontologies%2Fbibframe%2FAdminMetadata/descendants", "ancestors":"https://data.biblio.ontoportal.org/ontologies/BIBFRAME/classes/http%3A%2F%2Fid.loc.gov%2Fontologies%2Fbibframe%2FAdminMetadata/ancestors", "instances":"https://data.biblio.ontoportal.org/ontologies/BIBFRAME/classes/http%3A%2F%2Fid.loc.gov%2Fontologies%2Fbibframe%2FAdminMetadata/instances", "tree":"https://data.biblio.ontoportal.org/ontologies/BIBFRAME/classes/http%3A%2F%2Fid.loc.gov%2Fontologies%2Fbibframe%2FAdminMetadata/tree", "notes":"https://data.biblio.ontoportal.org/ontologies/BIBFRAME/classes/http%3A%2F%2Fid.loc.gov%2Fontologies%2Fbibframe%2FAdminMetadata/notes", "mappings":"https://data.biblio.ontoportal.org/ontologies/BIBFRAME/classes/http%3A%2F%2Fid.loc.gov%2Fontologies%2Fbibframe%2FAdminMetadata/mappings", "ui":"http://http://biblio.ontoportal.org/ontologies/BIBFRAME?p=classes&conceptid=http%3A%2F%2Fid.loc.gov%2Fontologies%2Fbibframe%2FAdminMetadata", "@context":{"self":"http://www.w3.org/2002/07/owl#Class", "ontology":"http://data.bioontology.org/metadata/Ontology", "children":"http://www.w3.org/2002/07/owl#Class", "parents":"http://www.w3.org/2002/07/owl#Class", "descendants":"http://www.w3.org/2002/07/owl#Class", "ancestors":"http://www.w3.org/2002/07/owl#Class", "instances":"http://data.bioontology.org/metadata/Instance", "tree":"http://www.w3.org/2002/07/owl#Class", "notes":"http://data.bioontology.org/metadata/Note", "mappings":"http://data.bioontology.org/metadata/Mapping", "ui":"http://www.w3.org/2002/07/owl#Class"}}, "@context":{"@vocab":"http://data.bioontology.org/metadata/"}},{"@id":"ri:AdminMetadata", "@type":"http://www.w3.org/2002/07/owl#Class", "links":{"self":"https://data.biblio.ontoportal.org/ontologies/MODS-RDF/classes/ri%3AAdminMetadata", "ontology":"https://data.biblio.ontoportal.org/ontologies/MODS-RDF", "children":"https://data.biblio.ontoportal.org/ontologies/MODS-RDF/classes/ri%3AAdminMetadata/children", "parents":"https://data.biblio.ontoportal.org/ontologies/MODS-RDF/classes/ri%3AAdminMetadata/parents", "descendants":"https://data.biblio.ontoportal.org/ontologies/MODS-RDF/classes/ri%3AAdminMetadata/descendants", "ancestors":"https://data.biblio.ontoportal.org/ontologies/MODS-RDF/classes/ri%3AAdminMetadata/ancestors", "instances":"https://data.biblio.ontoportal.org/ontologies/MODS-RDF/classes/ri%3AAdminMetadata/instances", "tree":"https://data.biblio.ontoportal.org/ontologies/MODS-RDF/classes/ri%3AAdminMetadata/tree", "notes":"https://data.biblio.ontoportal.org/ontologies/MODS-RDF/classes/ri%3AAdminMetadata/notes", "mappings":"https://data.biblio.ontoportal.org/ontologies/MODS-RDF/classes/ri%3AAdminMetadata/mappings", "ui":"http://http://biblio.ontoportal.org/ontologies/MODS-RDF?p=classes&conceptid=ri%3AAdminMetadata", "@context":{"self":"http://www.w3.org/2002/07/owl#Class", "ontology":"http://data.bioontology.org/metadata/Ontology", "children":"http://www.w3.org/2002/07/owl#Class", "parents":"http://www.w3.org/2002/07/owl#Class", "descendants":"http://www.w3.org/2002/07/owl#Class", "ancestors":"http://www.w3.org/2002/07/owl#Class", "instances":"http://data.bioontology.org/metadata/Instance", "tree":"http://www.w3.org/2002/07/owl#Class", "notes":"http://data.bioontology.org/metadata/Note", "mappings":"http://data.bioontology.org/metadata/Mapping", "ui":"http://www.w3.org/2002/07/owl#Class"}}, "@context":{"@vocab":"http://data.bioontology.org/metadata/"}}], "process":null, "@id":"", "@type":"http://data.bioontology.org/metadata/Mapping"}}'
at Unknown.Zs(0.js@270:74)
at Unknown.new kLa(0.js@179:794)
at Unknown._.le(0.js@377:794)
at Unknown._.Nf(0.js@331:1201)
at Unknown.Fka(0.js@262:672)
at Unknown._.Wd(0.js@222:227)
at Unknown.eval(0.js@131:226)
at Unknown.eval(0.js@235:1284)
Caused by: Class$S98: (TypeError) : Cannot read property 'b' of null
at Unknown._.ch(0.js@255:990)
at Unknown._.le(0.js@332:794)
at Unknown._.Nf(0.js@331:1201)
at Unknown.Fka(0.js@262:672)
at Unknown._.Wd(0.js@222:227)
at Unknown.eval(0.js@131:226)
at Unknown.eval(0.js@235:1284)
End user reported that the BioMixer visualization software doesn't allow you to expand mappings for concepts. I was able to reproduce this on Biblioportal:
Notice that no mappings are displayed. The Chrome developer console shows the following error, shortened for the sake of brevity:
I was able to expand the concepts using BioMixer. This problem seems specific to mappings.