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ncborcherding / escape

Easy single cell analysis platform for enrichment
https://www.borch.dev/uploads/screpertoire/articles/running_escape
MIT License
143 stars 20 forks source link

Clarification on `groups` argument in `escape.matrix` #103

Closed denvercal1234GitHub closed 2 months ago

denvercal1234GitHub commented 2 months ago

Hi, Nick,

Thanks for a great useful tool. I am excited to try it.

It says groups = The number of cells to separate the enrichment calculation. Could you please clarify what it means by "separating enrichment calculation"? Like per identity?

Thank you again.

ncborcherding commented 2 months ago

Groups is the total number of cells to perform the calculation on at a time, so the default is 1000 - meaning the enrichment score is calculated for the first 1000, then iteratively until all cells are done. This is really only for computational feasibility and does not affect the actual enrichment score calculation.

Hope that helps, Nick