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ncborcherding / escape

Easy single cell analysis platform for enrichment
https://www.borch.dev/uploads/screpertoire/articles/running_escape
MIT License
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getSignificance() question #125

Closed ayin0510 closed 1 month ago

ayin0510 commented 1 month ago

Hi Nick,

I am following along with this vignette https://bioconductor.statistik.tu-dortmund.de/packages/3.13/bioc/vignettes/escape/inst/doc/vignette.html#3_Enrichment. Is the getSignificance() function still available with the current version of escape?

Many thanks, Anna

ncborcherding commented 1 month ago

Hey @ayin0510

In the most recent version of escape (>=2.0), we have dropped getSignificance() in favor of other packages with statistical support for differential analysis. If you are using the bioc3.13 release of escape, it still should be in there.

Nick